Cluster: CGMR061675_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_08808
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_12020 | k141_12020_48 | 48491 | 49735 | - | 3.A.1.122.2 |
| pfam | k141_12020 | k141_12020_49 | 49732 | 51486 | - | Biotin_lipoyl_2 |
| TC | k141_12020 | k141_12020_50 | 51483 | 52181 | - | 3.A.1.122.2 |
| pfam | k141_12020 | k141_12020_51 | 52159 | 53322 | - | HlyD_3 | Biotin_lipoyl_2 |
| TC | k141_12020 | k141_12020_52 | 53447 | 55093 | + | 2.A.53.3.11 |
| TF | k141_12020 | k141_12020_53 | 55116 | 56333 | - | HTH_3 |
| TC | k141_12020 | k141_12020_54 | 56468 | 57337 | + | 2.A.115.1.5 |
| pfam | k141_12020 | k141_12020_55 | 57571 | 59808 | + | Gly_radical | PFL-like |
| pfam | k141_12020 | k141_12020_56 | 59837 | 60562 | + | Radical_SAM | Fer4_12 |
| CAZyme | k141_12020 | k141_12020_57 | 60613 | 63051 | - | GT51 |
Gene ID: k141_12020_48
Type: TC
Location: 48491 - 49735 (-)
Type: TC
Location: 48491 - 49735 (-)
Gene ID: k141_12020_49
Type: pfam
Location: 49732 - 51486 (-)
Type: pfam
Location: 49732 - 51486 (-)
Gene ID: k141_12020_50
Type: TC
Location: 51483 - 52181 (-)
Type: TC
Location: 51483 - 52181 (-)
Gene ID: k141_12020_51
Type: pfam
Location: 52159 - 53322 (-)
Type: pfam
Location: 52159 - 53322 (-)
Gene ID: k141_12020_52
Type: TC
Location: 53447 - 55093 (+)
Type: TC
Location: 53447 - 55093 (+)
Gene ID: k141_12020_53
Type: TF
Location: 55116 - 56333 (-)
Type: TF
Location: 55116 - 56333 (-)
Gene ID: k141_12020_54
Type: TC
Location: 56468 - 57337 (+)
Type: TC
Location: 56468 - 57337 (+)
Gene ID: k141_12020_55
Type: pfam
Location: 57571 - 59808 (+)
Type: pfam
Location: 57571 - 59808 (+)
Gene ID: k141_12020_56
Type: pfam
Location: 59837 - 60562 (+)
Type: pfam
Location: 59837 - 60562 (+)
Gene ID: k141_12020_57
Type: CAZyme
Location: 60613 - 63051 (-)
Type: CAZyme
Location: 60613 - 63051 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_12020_48 | vegan > omnivore | 2.42995 | 0.00457 |
| k141_12020_48 | vegetarian > omnivore | 3.33462 | 0.01188 |
| k141_12020_49 | vegan > omnivore | 3.25118 | 0.00457 |
| k141_12020_49 | vegetarian > omnivore | 4.36967 | 0.01188 |
| k141_12020_50 | vegan > omnivore | 1.08414 | 0.00457 |
| k141_12020_50 | vegetarian > omnivore | 3.21699 | 0.01188 |
| k141_12020_51 | vegetarian > omnivore | 1.03762 | 0.01188 |
| k141_12020_55 | vegan > omnivore | 1.46130 | 0.00457 |