Cluster: CGMR061675_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_00092
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_227204 | k141_227204_70 | 69021 | 70001 | - | 9.B.146.1.6 |
| pfam | k141_227204 | k141_227204_71 | 70148 | 70339 | + | Ribosomal_L28 |
| NULL(UNKNOWN) | k141_227204 | k141_227204_72 | 70411 | 70761 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_227204 | k141_227204_73 | 70865 | 73009 | - | GH112 |
| TC | k141_227204 | k141_227204_74 | 73027 | 74118 | - | 3.A.1.1.26 |
| pfam | k141_227204 | k141_227204_75 | 74130 | 74303 | - | DUF6903 |
| TC | k141_227204 | k141_227204_76 | 74316 | 75176 | - | 3.A.1.1.18 |
| TC | k141_227204 | k141_227204_77 | 75188 | 76069 | - | 3.A.1.1.25 |
Gene ID: k141_227204_70
Type: TC
Location: 69021 - 70001 (-)
Type: TC
Location: 69021 - 70001 (-)
Gene ID: k141_227204_71
Type: pfam
Location: 70148 - 70339 (+)
Type: pfam
Location: 70148 - 70339 (+)
Gene ID: k141_227204_72
Type:
Location: 70411 - 70761 (-)
Type:
Location: 70411 - 70761 (-)
Gene ID: k141_227204_73
Type: CAZyme
Location: 70865 - 73009 (-)
Type: CAZyme
Location: 70865 - 73009 (-)
Gene ID: k141_227204_74
Type: TC
Location: 73027 - 74118 (-)
Type: TC
Location: 73027 - 74118 (-)
Gene ID: k141_227204_75
Type: pfam
Location: 74130 - 74303 (-)
Type: pfam
Location: 74130 - 74303 (-)
Gene ID: k141_227204_76
Type: TC
Location: 74316 - 75176 (-)
Type: TC
Location: 74316 - 75176 (-)
Gene ID: k141_227204_77
Type: TC
Location: 75188 - 76069 (-)
Type: TC
Location: 75188 - 76069 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_227204_71 | vegan > omnivore | 19.93253 | 0.00457 |
| k141_227204_71 | vegetarian > omnivore | 19.03481 | 0.01188 |
| k141_227204_74 | vegan > omnivore | 1.16152 | 0.00457 |
| k141_227204_75 | vegetarian > omnivore | 2.61989 | 0.01188 |
| k141_227204_76 | vegan > omnivore | 1.39447 | 0.00457 |
| k141_227204_76 | vegetarian > omnivore | 2.00053 | 0.01188 |
| k141_227204_77 | vegan > omnivore | 2.63356 | 0.00457 |
| k141_227204_77 | vegetarian > omnivore | 3.10562 | 0.01188 |