Cluster: CGMR061675_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_00851
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_169515 | k141_169515_5 | 3381 | 4211 | + | 3.A.1.104.1 |
| TC | k141_169515 | k141_169515_6 | 4222 | 5040 | + | 3.A.1.104.2 |
| pfam | k141_169515 | k141_169515_7 | 5120 | 5506 | + | CTP_transf_like |
| CAZyme | k141_169515 | k141_169515_8 | 5508 | 7745 | + | GT2 |
| pfam | k141_169515 | k141_169515_9 | 7762 | 8967 | + | Glyphos_transf |
| pfam | k141_169515 | k141_169515_10 | 8969 | 10033 | + | Glyphos_transf |
| TC | k141_169515 | k141_169515_11 | 10416 | 11609 | + | 2.A.120.1.3 |
Gene ID: k141_169515_5
Type: TC
Location: 3381 - 4211 (+)
Type: TC
Location: 3381 - 4211 (+)
Gene ID: k141_169515_6
Type: TC
Location: 4222 - 5040 (+)
Type: TC
Location: 4222 - 5040 (+)
Gene ID: k141_169515_7
Type: pfam
Location: 5120 - 5506 (+)
Type: pfam
Location: 5120 - 5506 (+)
Gene ID: k141_169515_8
Type: CAZyme
Location: 5508 - 7745 (+)
Type: CAZyme
Location: 5508 - 7745 (+)
Gene ID: k141_169515_9
Type: pfam
Location: 7762 - 8967 (+)
Type: pfam
Location: 7762 - 8967 (+)
Gene ID: k141_169515_10
Type: pfam
Location: 8969 - 10033 (+)
Type: pfam
Location: 8969 - 10033 (+)
Gene ID: k141_169515_11
Type: TC
Location: 10416 - 11609 (+)
Type: TC
Location: 10416 - 11609 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_169515_5 | vegan > omnivore | 19.01457 | 0.00457 |
| k141_169515_5 | vegetarian > omnivore | 18.99391 | 0.01188 |
| k141_169515_7 | vegan > omnivore | 4.01427 | 0.00457 |
| k141_169515_8 | vegan > omnivore | 3.46570 | 0.00457 |
| k141_169515_8 | vegetarian > omnivore | 3.14895 | 0.01188 |
| k141_169515_9 | vegan > omnivore | 3.58966 | 0.00457 |
| k141_169515_9 | vegetarian > omnivore | 4.74405 | 0.01188 |
| k141_169515_11 | vegan > omnivore | 2.92952 | 0.00457 |
| k141_169515_11 | vegetarian > omnivore | 3.52104 | 0.01188 |