Cluster: CGMR061675_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- CGC Family ID: CGCFAM_08807
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_238924 | k141_238924_24 | 17985 | 19811 | - | CBM48 | GH13_9 |
| pfam | k141_238924 | k141_238924_25 | 19914 | 20879 | - | His_biosynth | His_biosynth | Dus |
| pfam | k141_238924 | k141_238924_26 | 20872 | 21756 | - | HSP33 |
| TC | k141_238924 | k141_238924_27 | 21856 | 23811 | - | 3.A.16.1.1 |
Gene ID: k141_238924_24
Type: CAZyme
Location: 17985 - 19811 (-)
Type: CAZyme
Location: 17985 - 19811 (-)
Gene ID: k141_238924_25
Type: pfam
Location: 19914 - 20879 (-)
Type: pfam
Location: 19914 - 20879 (-)
Gene ID: k141_238924_26
Type: pfam
Location: 20872 - 21756 (-)
Type: pfam
Location: 20872 - 21756 (-)
Gene ID: k141_238924_27
Type: TC
Location: 21856 - 23811 (-)
Type: TC
Location: 21856 - 23811 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_238924_24 | vegan > omnivore | 1.65660 | 0.00457 |
| k141_238924_24 | vegetarian > omnivore | 2.37659 | 0.01188 |
| k141_238924_25 | vegan > omnivore | 1.06119 | 0.00457 |
| k141_238924_25 | vegetarian > omnivore | 2.05193 | 0.01188 |
| k141_238924_26 | vegan > omnivore | 1.17558 | 0.00457 |
| k141_238924_26 | vegetarian > omnivore | 2.17261 | 0.01188 |