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Genome Details

Selected Rep_genome_ID: CGMR012624
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes provencensis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR012624 3,158,994 92.74% 0.03% China Asia CGMR
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
CGMR012624_CGC44 CGCFAM_00001 Yes 4 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
CGMR012624_CGC3 CGCFAM_00006 Yes 10 6
CGMR012624_CGC49 CGCFAM_00006 Yes 8 3
CGMR012624_CGC23 CGCFAM_00017 Yes 6 3 fructan
CGMR012624_CGC1 CGCFAM_00023 Yes 7 3
CGMR012624_CGC8 CGCFAM_00083 Yes 4 2 beta-glucan
CGMR012624_CGC35 CGCFAM_00147 Yes 4 1
CGMR012624_CGC18 CGCFAM_00219 Yes 9 6 host glycan
CGMR012624_CGC40 CGCFAM_00439 Yes 11 5 host glycan
CGMR012624_CGC33 CGCFAM_00475 Yes 18 4
CGMR012624_CGC41 CGCFAM_00492 Yes 3 1
CGMR012624_CGC48 CGCFAM_00524 Yes 4 1
CGMR012624_CGC52 CGCFAM_00543 Yes 4 1
CGMR012624_CGC12 CGCFAM_00617 Yes 6 1
CGMR012624_CGC38 CGCFAM_00632 Yes 7 1
CGMR012624_CGC21 CGCFAM_00649 Yes 10 3 host glycan
CGMR012624_CGC50 CGCFAM_00893 Yes 4 1
CGMR012624_CGC34 CGCFAM_00900 Yes 3 1
CGMR012624_CGC15 CGCFAM_00921 Yes 9 1
CGMR012624_CGC6 CGCFAM_00984 Yes 4 1
CGMR012624_CGC20 CGCFAM_01434 Yes 5 2
CGMR012624_CGC7 CGCFAM_01494 Yes 9 5
CGMR012624_CGC13 CGCFAM_01496 Yes 20 10
CGMR012624_CGC17 CGCFAM_01681 Yes 11 3
CGMR012624_CGC25 CGCFAM_01682 Yes 12 3
Top CAZyme Families