Cluster: CGMR012624_CGC33
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_00475
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_140086 | k141_140086_122 | 147277 | 148302 | - | GT9 |
| pfam | k141_140086 | k141_140086_123 | 148286 | 148891 | - | DUF4254 |
| CAZyme | k141_140086 | k141_140086_124 | 148967 | 149971 | + | GH73 |
| NULL(UNKNOWN) | k141_140086 | k141_140086_125 | 149990 | 150676 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_140086 | k141_140086_126 | 150687 | 152822 | + | 8.A.51.1.1 |
| pfam | k141_140086 | k141_140086_127 | 152831 | 153289 | + | DNA_binding_1 | Methyltransf_1N |
| CAZyme | k141_140086 | k141_140086_128 | 153290 | 154690 | - | GT22 |
| CAZyme | k141_140086 | k141_140086_129 | 154964 | 156511 | - | GT22 |
| TC | k141_140086 | k141_140086_130 | 156660 | 158087 | - | 3.D.1.8.1 |
| TC | k141_140086 | k141_140086_131 | 158094 | 159578 | - | 3.D.1.5.1 |
| TC | k141_140086 | k141_140086_132 | 159592 | 161484 | - | 3.D.9.1.1 |
| TC | k141_140086 | k141_140086_133 | 161498 | 161806 | - | 3.D.1.2.1 |
| TC | k141_140086 | k141_140086_134 | 161819 | 162328 | - | 3.D.9.1.1 |
| STP | k141_140086 | k141_140086_135 | 162332 | 162769 | - | Fer4 | Fer4 |
| TC | k141_140086 | k141_140086_136 | 162772 | 163848 | - | 3.D.1.5.1 |
| TC | k141_140086 | k141_140086_137 | 164008 | 165627 | - | 3.D.1.5.1 |
| TC | k141_140086 | k141_140086_138 | 165620 | 166246 | - | 3.D.1.3.1 |
| TC | k141_140086 | k141_140086_139 | 166267 | 166617 | - | 3.D.1.8.1 |
Gene ID: k141_140086_122
Type: CAZyme
Location: 147277 - 148302 (-)
Type: CAZyme
Location: 147277 - 148302 (-)
Gene ID: k141_140086_123
Type: pfam
Location: 148286 - 148891 (-)
Type: pfam
Location: 148286 - 148891 (-)
Gene ID: k141_140086_124
Type: CAZyme
Location: 148967 - 149971 (+)
Type: CAZyme
Location: 148967 - 149971 (+)
Gene ID: k141_140086_125
Type:
Location: 149990 - 150676 (+)
Type:
Location: 149990 - 150676 (+)
Gene ID: k141_140086_126
Type: TC
Location: 150687 - 152822 (+)
Type: TC
Location: 150687 - 152822 (+)
Gene ID: k141_140086_127
Type: pfam
Location: 152831 - 153289 (+)
Type: pfam
Location: 152831 - 153289 (+)
Gene ID: k141_140086_128
Type: CAZyme
Location: 153290 - 154690 (-)
Type: CAZyme
Location: 153290 - 154690 (-)
Gene ID: k141_140086_129
Type: CAZyme
Location: 154964 - 156511 (-)
Type: CAZyme
Location: 154964 - 156511 (-)
Gene ID: k141_140086_130
Type: TC
Location: 156660 - 158087 (-)
Type: TC
Location: 156660 - 158087 (-)
Gene ID: k141_140086_131
Type: TC
Location: 158094 - 159578 (-)
Type: TC
Location: 158094 - 159578 (-)
Gene ID: k141_140086_132
Type: TC
Location: 159592 - 161484 (-)
Type: TC
Location: 159592 - 161484 (-)
Gene ID: k141_140086_133
Type: TC
Location: 161498 - 161806 (-)
Type: TC
Location: 161498 - 161806 (-)
Gene ID: k141_140086_134
Type: TC
Location: 161819 - 162328 (-)
Type: TC
Location: 161819 - 162328 (-)
Gene ID: k141_140086_135
Type: STP
Location: 162332 - 162769 (-)
Type: STP
Location: 162332 - 162769 (-)
Gene ID: k141_140086_136
Type: TC
Location: 162772 - 163848 (-)
Type: TC
Location: 162772 - 163848 (-)
Gene ID: k141_140086_137
Type: TC
Location: 164008 - 165627 (-)
Type: TC
Location: 164008 - 165627 (-)
Gene ID: k141_140086_138
Type: TC
Location: 165620 - 166246 (-)
Type: TC
Location: 165620 - 166246 (-)
Gene ID: k141_140086_139
Type: TC
Location: 166267 - 166617 (-)
Type: TC
Location: 166267 - 166617 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.