Cluster: CGMR012624_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_00439
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_85015 | k141_85015_42 | 58263 | 61154 | - | 1.B.14.6.1 |
| pfam | k141_85015 | k141_85015_43 | 61176 | 63041 | - | SusD_RagB | SusD-like_3 |
| TC | k141_85015 | k141_85015_44 | 63055 | 66243 | - | 1.B.14.6.1 |
| pfam | k141_85015 | k141_85015_45 | 66341 | 67933 | - | BACON | BACON | BACON | BACON_2 | BACON_2 | BACON_2 |
| CAZyme | k141_85015 | k141_85015_46 | 68051 | 69145 | - | GH105 |
| CAZyme | k141_85015 | k141_85015_47 | 69167 | 71185 | - | PL42 |
| CAZyme | k141_85015 | k141_85015_48 | 71208 | 72635 | - | PL42 |
| CAZyme | k141_85015 | k141_85015_49 | 72638 | 73819 | - | GH88 |
| TF | k141_85015 | k141_85015_50 | 73929 | 77975 | - | HTH_AraC |
| CAZyme | k141_85015 | k141_85015_51 | 78086 | 80089 | - | PL35 |
| TC | k141_85015 | k141_85015_52 | 80358 | 81728 | - | 2.A.1.4.3 |
Gene ID: k141_85015_42
Type: TC
Location: 58263 - 61154 (-)
Type: TC
Location: 58263 - 61154 (-)
Gene ID: k141_85015_43
Type: pfam
Location: 61176 - 63041 (-)
Type: pfam
Location: 61176 - 63041 (-)
Gene ID: k141_85015_44
Type: TC
Location: 63055 - 66243 (-)
Type: TC
Location: 63055 - 66243 (-)
Gene ID: k141_85015_45
Type: pfam
Location: 66341 - 67933 (-)
Type: pfam
Location: 66341 - 67933 (-)
Gene ID: k141_85015_46
Type: CAZyme
Location: 68051 - 69145 (-)
Type: CAZyme
Location: 68051 - 69145 (-)
Gene ID: k141_85015_47
Type: CAZyme
Location: 69167 - 71185 (-)
Type: CAZyme
Location: 69167 - 71185 (-)
Gene ID: k141_85015_48
Type: CAZyme
Location: 71208 - 72635 (-)
Type: CAZyme
Location: 71208 - 72635 (-)
Gene ID: k141_85015_49
Type: CAZyme
Location: 72638 - 73819 (-)
Type: CAZyme
Location: 72638 - 73819 (-)
Gene ID: k141_85015_50
Type: TF
Location: 73929 - 77975 (-)
Type: TF
Location: 73929 - 77975 (-)
Gene ID: k141_85015_51
Type: CAZyme
Location: 78086 - 80089 (-)
Type: CAZyme
Location: 78086 - 80089 (-)
Gene ID: k141_85015_52
Type: TC
Location: 80358 - 81728 (-)
Type: TC
Location: 80358 - 81728 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.