Cluster: CGMR012624_CGC21
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_00649
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_85408 | k141_85408_1 | 1 | 504 | - | GH3 |
| CAZyme | k141_85408 | k141_85408_2 | 514 | 2718 | - | GH20 |
| CAZyme | k141_85408 | k141_85408_3 | 3004 | 3876 | - | GH16_3 |
| NULL(UNKNOWN) | k141_85408 | k141_85408_4 | 3905 | 5806 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_85408 | k141_85408_5 | 5819 | 7354 | - | SusD_RagB | SusD-like_3 |
| TC | k141_85408 | k141_85408_6 | 7374 | 10805 | - | 1.B.14.6.1 |
| STP | k141_85408 | k141_85408_7 | 10839 | 11819 | - | FecR |
| TF | k141_85408 | k141_85408_8 | 11906 | 12496 | - | GerE |
| TC | k141_85408 | k141_85408_9 | 13329 | 14330 | + | 3.A.1.13.2 |
| TC | k141_85408 | k141_85408_10 | 14332 | 15090 | + | 3.A.1.13.2 |
Gene ID: k141_85408_1
Type: CAZyme
Location: 1 - 504 (-)
Type: CAZyme
Location: 1 - 504 (-)
Gene ID: k141_85408_2
Type: CAZyme
Location: 514 - 2718 (-)
Type: CAZyme
Location: 514 - 2718 (-)
Gene ID: k141_85408_3
Type: CAZyme
Location: 3004 - 3876 (-)
Type: CAZyme
Location: 3004 - 3876 (-)
Gene ID: k141_85408_4
Type:
Location: 3905 - 5806 (-)
Type:
Location: 3905 - 5806 (-)
Gene ID: k141_85408_5
Type: pfam
Location: 5819 - 7354 (-)
Type: pfam
Location: 5819 - 7354 (-)
Gene ID: k141_85408_6
Type: TC
Location: 7374 - 10805 (-)
Type: TC
Location: 7374 - 10805 (-)
Gene ID: k141_85408_7
Type: STP
Location: 10839 - 11819 (-)
Type: STP
Location: 10839 - 11819 (-)
Gene ID: k141_85408_8
Type: TF
Location: 11906 - 12496 (-)
Type: TF
Location: 11906 - 12496 (-)
Gene ID: k141_85408_9
Type: TC
Location: 13329 - 14330 (+)
Type: TC
Location: 13329 - 14330 (+)
Gene ID: k141_85408_10
Type: TC
Location: 14332 - 15090 (+)
Type: TC
Location: 14332 - 15090 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_85408_2 | vegetarian > omnivore | 3.69824 | 0.02017 |
| k141_85408_2 | vegetarian > vegan | 1.15823 | 0.04682 |
| k141_85408_4 | vegetarian > omnivore | 2.96406 | 0.04347 |
| k141_85408_8 | vegetarian > omnivore | 2.86390 | 0.03437 |