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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna15598.1-v1.0-hybrid |
Family | GH18 |
Protein Properties | Length: 296 Molecular Weight: 31370 Isoelectric Point: 4.4543 |
Chromosome | Chromosome/Scaffold: 6 Start: 15210726 End: 15211613 |
Description | chitinase A |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 25 | 243 | 6.4e-32 |
IAIYWGQNGNEGTLAETCGSGNYQFVNLAFLSSFGNGQTPTINLAGHCDPSTDECTKLSPDIKSCQAKGIKVILSIGGASGSYSLASSDDARQVATYLWN NFLGGQSSSRPLGDAVLDGVDFDIEGGSDQYWDDLARYLSGYSNKGKKVYLTAAPQCPFPDAYVGNALNTGLFDFVWVQFYNNPPCQYTSGDISNLENGW KQWTTAIPAHKIFLGLPAA |
Full Sequence |
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Protein Sequence Length: 296 Download |
MASKSTFSVA ILLLFLAVGS NAGGIAIYWG QNGNEGTLAE TCGSGNYQFV NLAFLSSFGN 60 GQTPTINLAG HCDPSTDECT KLSPDIKSCQ AKGIKVILSI GGASGSYSLA SSDDARQVAT 120 YLWNNFLGGQ SSSRPLGDAV LDGVDFDIEG GSDQYWDDLA RYLSGYSNKG KKVYLTAAPQ 180 CPFPDAYVGN ALNTGLFDFV WVQFYNNPPC QYTSGDISNL ENGWKQWTTA IPAHKIFLGL 240 PAAPQAAGSG FIPATDLNSQ VLPAIKNSAK YGGVMLWSKY YDDLDGYSSS IKNDV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06545 | GH18_3CO4_chitinase | 0.001 | 141 | 288 | 167 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
COG3469 | COG3469 | 1.0e-7 | 142 | 283 | 175 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 3.0e-8 | 47 | 290 | 293 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 3.0e-22 | 23 | 276 | 275 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 1.0e-124 | 23 | 293 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 23 | 295 | 1 | 273 | A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase |
PDB | 1llo_A | 0 | 23 | 295 | 1 | 273 | A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase |
PDB | 1hvq_A | 0 | 23 | 295 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 23 | 295 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 23 | 295 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |