y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064592m |
Family | GH18 |
Protein Properties | Length: 301 Molecular Weight: 32278.5 Isoelectric Point: 4.9184 |
Chromosome | Chromosome/Scaffold: 0117021 Start: 1359 End: 2293 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 25 | 244 | 9.6e-22 |
VKIVVYWGQNGNEDSLAATCATGRYATVIIAYLSVFGGGRTPELNLAGHCTNPTGAAAQICGIKVLLSIGGAAHNYSLSSASDAQSLATYLWSSFLGGTG HRPFGDDVELDGIDLAISGGSRGYYDDLARYLRSLYNASAAAGRTYLLSAAPRCPYPDAFLGPALDTGLFDHVWVQFFDNQNNQNQPCQYTFADQSYYLK GAWENWTRFLPSVFLGLPAS |
Full Sequence |
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Protein Sequence Length: 301 Download |
MACNFKLLCA WCLLLAQAAS GASGVKIVVY WGQNGNEDSL AATCATGRYA TVIIAYLSVF 60 GGGRTPELNL AGHCTNPTGA AAQICGIKVL LSIGGAAHNY SLSSASDAQS LATYLWSSFL 120 GGTGHRPFGD DVELDGIDLA ISGGSRGYYD DLARYLRSLY NASAAAGRTY LLSAAPRCPY 180 PDAFLGPALD TGLFDHVWVQ FFDNQNNQNQ PCQYTFADQS YYLKGAWENW TRFLPSVFLG 240 LPASPDASGF IDPQALALQV LPMVETSPNY GGIMLWSRYS DMLTGFSVKL QSIGTYYFLF 300 * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00704 | Glyco_hydro_18 | 2.0e-11 | 26 | 199 | 194 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 7.0e-94 | 26 | 290 | 286 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ14223.1 | 0 | 27 | 292 | 23 | 294 | hypothetical protein OsJ_04148 [Oryza sativa Japonica Group] |
GenBank | EEC71310.1 | 0 | 22 | 292 | 26 | 311 | hypothetical protein OsI_03342 [Oryza sativa Indica Group] |
RefSeq | NP_001043931.1 | 0 | 15 | 292 | 21 | 308 | Os01g0691000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001044872.1 | 0 | 27 | 292 | 32 | 303 | Os01g0860500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002456179.1 | 0 | 18 | 293 | 19 | 310 | hypothetical protein SORBIDRAFT_03g031710 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2gsj_A | 0 | 27 | 291 | 3 | 268 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
PDB | 1kqz_A | 0 | 27 | 290 | 3 | 269 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
PDB | 1kqy_A | 0 | 27 | 290 | 3 | 269 | A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag |
PDB | 1kr0_A | 0 | 27 | 290 | 3 | 269 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 27 | 290 | 3 | 269 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |