y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023535 |
Family | GH18 |
Protein Properties | Length: 297 Molecular Weight: 31406.3 Isoelectric Point: 4.4616 |
Chromosome | Chromosome/Scaffold: 1216 Start: 701479 End: 702369 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 31 | 244 | 2.7e-33 |
SIYWGQNGQEGTLAETCATRNYHYVNIAFLSSFGNGQPPQINLAGHCDPTNSGCAGLSSDIKACQAKGIKVLLSIGGGAGGYDLASTQDAENVATYLWDN FLGGHSSSRPLGPAVLDGIDFDIEGGTNMYWDDLARSLKSRGEKILLSAAPQCPFPDAWIGNALQTGLFDYVWVQFYNNPPCQYSSGSISNLEDAWKQWN GIPAKKIFLGLPAA |
Full Sequence |
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Protein Sequence Length: 297 Download |
MAFRAAMAMS ILVSSILLAA LMAGSEAGGI SIYWGQNGQE GTLAETCATR NYHYVNIAFL 60 SSFGNGQPPQ INLAGHCDPT NSGCAGLSSD IKACQAKGIK VLLSIGGGAG GYDLASTQDA 120 ENVATYLWDN FLGGHSSSRP LGPAVLDGID FDIEGGTNMY WDDLARSLKS RGEKILLSAA 180 PQCPFPDAWI GNALQTGLFD YVWVQFYNNP PCQYSSGSIS NLEDAWKQWN GIPAKKIFLG 240 LPAAPNAAGS GFIPASDLES EILPAIKDSD KYGGVMLWSK FYDDETGYSK AIKNSV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06545 | GH18_3CO4_chitinase | 8.0e-11 | 54 | 289 | 257 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
COG3469 | COG3469 | 1.0e-14 | 27 | 286 | 296 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 3.0e-16 | 52 | 289 | 289 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 3.0e-33 | 28 | 283 | 341 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 1.0e-130 | 28 | 294 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF82271.1 | 0 | 1 | 296 | 1 | 298 | class III chitinase [Panax ginseng] |
RefSeq | XP_002301383.1 | 0 | 1 | 296 | 1 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 1 | 296 | 3 | 300 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511934.1 | 0 | 1 | 296 | 1 | 298 | hevamine-A precursor, putative [Ricinus communis] |
RefSeq | XP_002533316.1 | 0 | 1 | 296 | 1 | 298 | hevamine-A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 28 | 296 | 1 | 273 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1llo_A | 0 | 28 | 296 | 1 | 273 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1hvq_A | 0 | 28 | 296 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 28 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 28 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |