y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.004G116500.1 |
Family | GH18 |
Protein Properties | Length: 301 Molecular Weight: 32580.7 Isoelectric Point: 10.3594 |
Chromosome | Chromosome/Scaffold: 04 Start: 28095091 End: 28096328 |
Description | chitinase A |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 30 | 249 | 1.3e-27 |
IAIYWGQSGSETTLNQTCNTGRYKYVNIAFLNKFGSRRTPGLNLAGHCNPANGGCRVASSEIKHCQSKGIKVMLSIGGGIGQYSLASKADAKRVAAYLYN NFLGGRSASRPLGSAVLNGIDFDIELGSTKYWADLARYLAAYSKPGKKVYLSAAPQCPIPDKFLGSALSTGLFDYVWVQFYNNPPCQYSPGNTSKILASW KRWVRMKSIKKLFLGLPAAR |
Full Sequence |
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Protein Sequence Length: 301 Download |
MFTKTKPISN LLVSFLVLAA LIEVSHAGGI AIYWGQSGSE TTLNQTCNTG RYKYVNIAFL 60 NKFGSRRTPG LNLAGHCNPA NGGCRVASSE IKHCQSKGIK VMLSIGGGIG QYSLASKADA 120 KRVAAYLYNN FLGGRSASRP LGSAVLNGID FDIELGSTKY WADLARYLAA YSKPGKKVYL 180 SAAPQCPIPD KFLGSALSTG LFDYVWVQFY NNPPCQYSPG NTSKILASWK RWVRMKSIKK 240 LFLGLPAARA AAGSGYIPPD VLTSKIIPEI RKSSKYGGVM LWNRYYDRVN GYSAAIKSKV 300 * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06543 | GH18_PF-ChiA-like | 9.0e-5 | 68 | 170 | 115 | + PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. | ||
COG3469 | COG3469 | 5.0e-5 | 36 | 287 | 288 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 9.0e-9 | 52 | 293 | 289 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 2.0e-27 | 28 | 287 | 337 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 2.0e-135 | 28 | 298 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD56239.1 | 0 | 20 | 300 | 20 | 301 | AF184884_1 class III chitinase [Benincasa hispida] |
GenBank | ACH54087.1 | 0 | 4 | 287 | 3 | 284 | class III chitinase [Vitis vinifera] |
RefSeq | XP_002264744.1 | 0 | 4 | 287 | 3 | 284 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266583.1 | 0 | 11 | 300 | 10 | 297 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331830.1 | 0 | 22 | 300 | 20 | 296 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 28 | 300 | 1 | 273 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1llo_A | 0 | 28 | 300 | 1 | 273 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1hvq_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |