y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G389400.1 |
Family | GH18 |
Protein Properties | Length: 299 Molecular Weight: 32089 Isoelectric Point: 4.2752 |
Chromosome | Chromosome/Scaffold: 09 Start: 52679001 End: 52679897 |
Description | chitinase A |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 27 | 246 | 4.6e-31 |
DIAIYWGQNSDEGTLAETCATGNYDFVSLAFLPTFGNGQTPMINLAGHCDPYSNGCTNLSSDIKSCQAQGIKVILSLGGGAGSYYLASSDDARQVATYLW NNFLGGESASRPFGDAILDGIDFDIEGGTNQHWDDLAKYLSGYSQRSKKVYLTAAPQCPFPDAWVGGALKTGLFDYVWVQFYNNPQCEYIDGDITNLENA WKQWTTNVPATKIFLGLPAS |
Full Sequence |
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Protein Sequence Length: 299 Download |
MAIKSAILLA FATSVILVLV TGINAGDIAI YWGQNSDEGT LAETCATGNY DFVSLAFLPT 60 FGNGQTPMIN LAGHCDPYSN GCTNLSSDIK SCQAQGIKVI LSLGGGAGSY YLASSDDARQ 120 VATYLWNNFL GGESASRPFG DAILDGIDFD IEGGTNQHWD DLAKYLSGYS QRSKKVYLTA 180 APQCPFPDAW VGGALKTGLF DYVWVQFYNN PQCEYIDGDI TNLENAWKQW TTNVPATKIF 240 LGLPASPEAA GRGFIPESDL ISQVLPAIKG STKYGGVMLW SNYYDNQTGY SSAIKNYV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3469 | COG3469 | 2.0e-7 | 145 | 288 | 181 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 2.0e-11 | 50 | 291 | 288 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 1.0e-25 | 28 | 281 | 282 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 2.0e-128 | 26 | 296 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF82271.1 | 0 | 1 | 298 | 1 | 298 | class III chitinase [Panax ginseng] |
GenBank | ABL74451.1 | 0 | 1 | 298 | 1 | 298 | class III chitinase [Casuarina glauca] |
RefSeq | XP_002279147.1 | 0 | 22 | 298 | 22 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301383.1 | 0 | 1 | 298 | 1 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 1 | 298 | 3 | 300 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 1llo_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 1hvq_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |