y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023534 |
Family | GH18 |
Protein Properties | Length: 299 Molecular Weight: 32338.4 Isoelectric Point: 6.5037 |
Chromosome | Chromosome/Scaffold: 1216 Start: 699843 End: 700739 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 27 | 249 | 2.1e-28 |
IAIYWGQNGNEASLEETCATGDYRYVIIAFLPTFGNSQTPTINLAGHCNLTSGGCEGLSSEIKSCQEKGVKVLLSIGGGVGSYYLTSTDDARKVATYLWD NFLGGHSSSRPLGEAVLDGIDFDIEGGTPEHWSDLARFLKHHNNGGNKQVYVTAAPQCIFPDAWVGSALTTGLFDYLWVQLYNNPPCQYSDGSIDGLEDA WHRWTSSIPTKKVFLGLPAAEGA |
Full Sequence |
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Protein Sequence Length: 299 Download |
MSAFSRAATS LMWRLLSMLK SLEAGSIAIY WGQNGNEASL EETCATGDYR YVIIAFLPTF 60 GNSQTPTINL AGHCNLTSGG CEGLSSEIKS CQEKGVKVLL SIGGGVGSYY LTSTDDARKV 120 ATYLWDNFLG GHSSSRPLGE AVLDGIDFDI EGGTPEHWSD LARFLKHHNN GGNKQVYVTA 180 APQCIFPDAW VGSALTTGLF DYLWVQLYNN PPCQYSDGSI DGLEDAWHRW TSSIPTKKVF 240 LGLPAAEGAA GSGFIPAHDP INKVLPTIKK SKKYGGVMLW SKYYDEQSGY SKAIKNHV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06545 | GH18_3CO4_chitinase | 1.0e-8 | 55 | 291 | 262 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
COG3469 | COG3469 | 4.0e-9 | 87 | 285 | 235 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 2.0e-17 | 48 | 291 | 293 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 4.0e-28 | 25 | 298 | 296 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 3.0e-132 | 25 | 296 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ21404.1 | 0 | 15 | 298 | 18 | 298 | class III chitinase [Medicago truncatula] |
GenBank | ABL74451.1 | 0 | 11 | 298 | 12 | 298 | class III chitinase [Casuarina glauca] |
RefSeq | XP_002301383.1 | 0 | 15 | 298 | 16 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 15 | 298 | 18 | 300 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530928.1 | 0 | 23 | 298 | 24 | 298 | hevamine-A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 25 | 298 | 1 | 273 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 1llo_A | 0 | 25 | 298 | 1 | 273 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 1hvq_A | 0 | 25 | 298 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 25 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 25 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |