y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si004596m |
Family | GH18 |
Protein Properties | Length: 306 Molecular Weight: 31434 Isoelectric Point: 4.5874 |
Chromosome | Chromosome/Scaffold: 5 Start: 33723822 End: 33724739 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 30 | 253 | 9e-27 |
QVAVYWGQGGSGGDGSLADTCATGLYNFVNIAFISSFGKGNGQPPVLNLANHCDPGAGTCAVFSSEIKSCQASGVKVLISLGGATETYSLTSDDEARGLA DYLWDNFLGGSSPSRPLGDAVLNGVDFDIEKGGVDHYDELARAISSRCGGACVLTAAPQCPYPDLHLDAAIRTGLFSHVWVQFYNNARCQYASGDASSLE STWKQWTATVPSPGNVFLGLPAAE |
Full Sequence |
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Protein Sequence Length: 306 Download |
MASSRILRSS PLLVAASILV AFTAVSGAGQ VAVYWGQGGS GGDGSLADTC ATGLYNFVNI 60 AFISSFGKGN GQPPVLNLAN HCDPGAGTCA VFSSEIKSCQ ASGVKVLISL GGATETYSLT 120 SDDEARGLAD YLWDNFLGGS SPSRPLGDAV LNGVDFDIEK GGVDHYDELA RAISSRCGGA 180 CVLTAAPQCP YPDLHLDAAI RTGLFSHVWV QFYNNARCQY ASGDASSLES TWKQWTATVP 240 SPGNVFLGLP AAESAAPSGG YIDADTLRSQ VLPAVQGAAN YGGVMLWDRA RDAASGYGNS 300 VRGNV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06546 | GH18_CTS3_chitinase | 2.0e-5 | 100 | 288 | 214 | + GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi. | ||
COG3469 | COG3469 | 8.0e-9 | 55 | 287 | 267 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 2.0e-15 | 55 | 303 | 299 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 5.0e-24 | 29 | 292 | 343 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 7.0e-116 | 29 | 303 | 285 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABW75911.1 | 0 | 5 | 305 | 4 | 301 | class III chitinase [Bambusa oldhamii] |
DDBJ | BAA08708.1 | 0 | 7 | 305 | 4 | 297 | chitinase [Psophocarpus tetragonolobus] |
DDBJ | BAC78593.1 | 0 | 18 | 305 | 1 | 286 | chitinase [Oryza sativa Japonica Group] |
EMBL | CAB43737.2 | 0 | 7 | 305 | 4 | 298 | chitinase [Trifolium repens] |
RefSeq | NP_001043912.1 | 0 | 5 | 305 | 4 | 302 | Os01g0687400 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 29 | 305 | 1 | 273 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1llo_A | 0 | 29 | 305 | 1 | 273 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1hvq_A | 0 | 29 | 305 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 2gsj_A | 0 | 29 | 305 | 1 | 271 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
PDB | 1kr0_A | 0 | 29 | 305 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |