y
Basic Information | |
---|---|
Species | Mimulus guttatus |
Cazyme ID | mgv1a013181m |
Family | GH18 |
Protein Properties | Length: 229 Molecular Weight: 24721.6 Isoelectric Point: 4.6948 |
Chromosome | Chromosome/Scaffold: 155 Start: 63601 End: 64777 |
Description | chitinase A |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH18 | 16 | 182 | 4e-29 |
TNLSSDIKSCQAKGIKVMLSIGGGAGSYYLASSQDARQVATYLWNNFLGGKSSSRPLGDAILDGIDFDIEGGTNLYWDDLARYLSNYGKVNGKKVYLSAA PQCPFPDYYIGNALQTGIFDYVWVQFYNNAPCQYSSGMESFENAWNDWNSIPAGKIFLGLPASAQAA |
Full Sequence |
---|
Protein Sequence Length: 229 Download |
MINLAGHCDP YTNGCTNLSS DIKSCQAKGI KVMLSIGGGA GSYYLASSQD ARQVATYLWN 60 NFLGGKSSSR PLGDAILDGI DFDIEGGTNL YWDDLARYLS NYGKVNGKKV YLSAAPQCPF 120 PDYYIGNALQ TGIFDYVWVQ FYNNAPCQYS SGMESFENAW NDWNSIPAGK IFLGLPASAQ 180 AAGTGFVPAS DLISQVLPVI KGSDKYGGVM LWDRYHDNGY SSSINKDV* 240 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06545 | GH18_3CO4_chitinase | 0.0005 | 77 | 217 | 158 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
cd02871 | GH18_chitinase_D-like | 1.0e-7 | 20 | 228 | 258 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
COG3469 | COG3469 | 5.0e-10 | 78 | 222 | 178 | + Chitinase [Carbohydrate transport and metabolism] | ||
pfam00704 | Glyco_hydro_18 | 3.0e-14 | 2 | 181 | 210 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 2.0e-97 | 2 | 224 | 235 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO47731.1 | 0 | 1 | 228 | 67 | 294 | acidic class III chitinase [Rehmannia glutinosa] |
RefSeq | XP_002279205.1 | 0 | 1 | 228 | 68 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301383.1 | 0 | 1 | 228 | 68 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301782.1 | 0 | 1 | 228 | 66 | 295 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 1 | 228 | 70 | 300 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 1 | 224 | 43 | 269 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1llo_A | 0 | 1 | 224 | 43 | 269 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1hvq_A | 0 | 1 | 224 | 43 | 269 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 1 | 228 | 43 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 1 | 228 | 43 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JK988873 | 232 | 1 | 228 | 0 |
FQ317294 | 219 | 1 | 217 | 0 |
FQ316723 | 220 | 1 | 218 | 0 |
FP028341 | 231 | 2 | 229 | 0 |
FQ316915 | 220 | 1 | 218 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|