y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10004675m |
Family | GH18 |
Protein Properties | Length: 302 Molecular Weight: 32929.6 Isoelectric Point: 9.4084 |
Chromosome | Chromosome/Scaffold: 6 Start: 3070943 End: 3072500 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 31 | 249 | 1.8e-25 |
IAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQIKDCQSRSIKVMLSLGGGIGNYSIGSREDAKVVADYLWN NFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARFLSKFSHRGRKVYLTGAPQCPFPDRLMGGPLNTRLFDYVWVQFYNNPPCQYTSGNTKSLFDSW NTWTTSISAKKILLGLPAA |
Full Sequence |
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Protein Sequence Length: 302 Download |
MSNIKFLKPV ISFIFVISCY FSKPSAASRG IAIYWGQNGN EGNLSATCAT GRYAYVNVAF 60 LVKFGNGQTP ELNLAGHCNP AANTCTHFGS QIKDCQSRSI KVMLSLGGGI GNYSIGSRED 120 AKVVADYLWN NFLGGKSSSR PLGDAVLDGI DFNIELGSPQ HWDDLARFLS KFSHRGRKVY 180 LTGAPQCPFP DRLMGGPLNT RLFDYVWVQF YNNPPCQYTS GNTKSLFDSW NTWTTSISAK 240 KILLGLPAAP EAAGSGYIPP DVLISQILPI LKKSRKYGGI MLWSKFWDDK NGYSSSVLAS 300 V* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3469 | COG3469 | 2.0e-5 | 53 | 289 | 271 | + Chitinase [Carbohydrate transport and metabolism] | ||
cd02871 | GH18_chitinase_D-like | 8.0e-6 | 53 | 296 | 295 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
pfam00704 | Glyco_hydro_18 | 2.0e-24 | 31 | 242 | 233 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 2.0e-120 | 30 | 297 | 277 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA21865.1 | 0 | 1 | 301 | 1 | 302 | acidic endochitinase [Arabidopsis thaliana] |
DDBJ | BAA21873.1 | 0 | 1 | 301 | 1 | 302 | acidic endochitinase [Arabidopsis thaliana] |
DDBJ | BAA21874.1 | 0 | 1 | 301 | 1 | 302 | acidic endochitinase [Arabidopsis thaliana] |
DDBJ | BAA21876.1 | 0 | 1 | 301 | 1 | 302 | acidic endochitinase [Turritis glabra] |
RefSeq | NP_197797.1 | 0 | 1 | 301 | 1 | 302 | acidic endochitinase (CHIB1) [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 30 | 301 | 2 | 273 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1llo_A | 0 | 30 | 301 | 2 | 273 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1hvq_A | 0 | 30 | 301 | 2 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 30 | 301 | 2 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 30 | 301 | 2 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |