y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29717.m000230 |
Family | GH18 |
Protein Properties | Length: 298 Molecular Weight: 31558.3 Isoelectric Point: 4.138 |
Chromosome | Chromosome/Scaffold: 29717 Start: 60845 End: 61741 |
Description | chitinase A |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 28 | 246 | 6.9e-31 |
IAIYWGQNGNEGTLAETCATGNYDFVNIAFLSSFGNGQTPMINLAGHCDPYSNGCIGLSSDIESCQSKGIKVILSIGGGAGGYSLASADDARQVATYLWN NFLDGTSSSRPLGPAVLDGIDFDIEGGTGLYWDDLARYLSAYSSKGKKVYLTAAPQCPFPDAWVGKALNTGLFDYVWVQFYNNPPCQYSSGEVTNLEDAW KQWISDIPATEIFLGLPAS |
Full Sequence |
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Protein Sequence Length: 298 Download |
MAFQSAITLS ILTLALLMLA AGSDAGGIAI YWGQNGNEGT LAETCATGNY DFVNIAFLSS 60 FGNGQTPMIN LAGHCDPYSN GCIGLSSDIE SCQSKGIKVI LSIGGGAGGY SLASADDARQ 120 VATYLWNNFL DGTSSSRPLG PAVLDGIDFD IEGGTGLYWD DLARYLSAYS SKGKKVYLTA 180 APQCPFPDAW VGKALNTGLF DYVWVQFYNN PPCQYSSGEV TNLEDAWKQW ISDIPATEIF 240 LGLPASPEAA GSGFIPVPDL TSSVLPAIKG STKYGGVMLW SKYYDDQSGY SSSIRSHV 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02871 | GH18_chitinase_D-like | 7.0e-6 | 50 | 293 | 292 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
COG3469 | COG3469 | 9.0e-11 | 145 | 286 | 173 | + Chitinase [Carbohydrate transport and metabolism] | ||
pfam00704 | Glyco_hydro_18 | 2.0e-23 | 26 | 282 | 285 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 9.0e-123 | 26 | 296 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002279147.1 | 0 | 22 | 298 | 22 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301383.1 | 0 | 1 | 298 | 1 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 1 | 298 | 3 | 300 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511934.1 | 0 | 1 | 298 | 1 | 298 | hevamine-A precursor, putative [Ricinus communis] |
RefSeq | XP_002533316.1 | 0 | 1 | 298 | 1 | 298 | hevamine-A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana |
PDB | 1llo_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana |
PDB | 1hvq_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 26 | 298 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |