y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H04884.1 |
Family | GH18 |
Protein Properties | Length: 293 Molecular Weight: 31290.2 Isoelectric Point: 4.8669 |
Chromosome | Chromosome/Scaffold: 8 Start: 69419982 End: 69420860 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 29 | 251 | 1.9e-30 |
SIYWGQNGNEGTLAETCATGKYEFVNVAFLATFGAGQNPVINLAGHCDPYSHDPYSHPCTALSADIKSCQAKGIKVMLSIGGGAGSYSLASSDDARRVAT YLWNNFLGGSSSSRPLGNAVLDGIDFDIEGGTGLYWDDLARYLSSYSKRGKKVYLTAAPQCPFPDASVGKALKTGLFDYVWVQFYNNPPCQYSSGDIGNL EDAWKQWTSSIQATKIFLGLPAS |
Full Sequence |
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Protein Sequence Length: 293 Download |
MEYRVAVVFP LILVAVLALA VESDAGGISI YWGQNGNEGT LAETCATGKY EFVNVAFLAT 60 FGAGQNPVIN LAGHCDPYSH DPYSHPCTAL SADIKSCQAK GIKVMLSIGG GAGSYSLASS 120 DDARRVATYL WNNFLGGSSS SRPLGNAVLD GIDFDIEGGT GLYWDDLARY LSSYSKRGKK 180 VYLTAAPQCP FPDASVGKAL KTGLFDYVWV QFYNNPPCQY SSGDIGNLED AWKQWTSSIQ 240 ATKIFLGLPA SPDAAGSGFI PVTDLTSKVL PAIKGSEKYG GVMLWSKYYD DQS 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06546 | GH18_CTS3_chitinase | 0.001 | 58 | 285 | 247 | + GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi. | ||
cd02871 | GH18_chitinase_D-like | 3.0e-9 | 49 | 286 | 293 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
COG3469 | COG3469 | 9.0e-11 | 50 | 291 | 274 | + Chitinase [Carbohydrate transport and metabolism] | ||
pfam00704 | Glyco_hydro_18 | 9.0e-23 | 26 | 284 | 282 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 6.0e-125 | 26 | 292 | 274 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF82271.1 | 0 | 1 | 293 | 1 | 288 | class III chitinase [Panax ginseng] |
RefSeq | XP_002301383.1 | 0 | 1 | 293 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320164.1 | 0 | 1 | 293 | 3 | 290 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511934.1 | 0 | 1 | 293 | 1 | 288 | hevamine-A precursor, putative [Ricinus communis] |
RefSeq | XP_002533316.1 | 0 | 1 | 293 | 1 | 288 | hevamine-A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 26 | 293 | 1 | 263 | X Chain X, Structure-Function Relationships In Human Salivary Alpha- Amylase: Role Of Aromatic Resid |
PDB | 1llo_A | 0 | 26 | 293 | 1 | 263 | X Chain X, Structure-Function Relationships In Human Salivary Alpha- Amylase: Role Of Aromatic Resid |
PDB | 1hvq_A | 0 | 26 | 293 | 1 | 263 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 26 | 293 | 1 | 263 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 26 | 293 | 1 | 263 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |