y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si017280m |
Family | GT47 |
Protein Properties | Length: 428 Molecular Weight: 47895.4 Isoelectric Point: 7.8167 |
Chromosome | Chromosome/Scaffold: 1 Start: 25096570 End: 25099878 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 60 | 355 | 0 |
RLKVFVYDLPSKYNKRIVTKDPRCLNHMFAAEIFMHRFLLSSAVRTLKPEEADWFYAPVYTTCDLTPAGLPLPFKSPRMMRSAIQFISHKWPFWNKTDGA DHFFVVPHDFGACFHYQEEKAIERGILPMLRRATLVQTFGQKNHVCLKEGSIIIPPYAPPQKMQAHLIPPDTPRSIFVYFRGLFYDNGNDPEGGYYARGT RASLWENFKNNPLFDISTDHPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEEDVPKLDSILTSI |
Full Sequence |
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Protein Sequence Length: 428 Download |
MTAARAKVLL AVASLSCLLL SSPAASAAAG AEVAGGVAHR NIERIAGSAG DVLEDNPVGR 60 LKVFVYDLPS KYNKRIVTKD PRCLNHMFAA EIFMHRFLLS SAVRTLKPEE ADWFYAPVYT 120 TCDLTPAGLP LPFKSPRMMR SAIQFISHKW PFWNKTDGAD HFFVVPHDFG ACFHYQEEKA 180 IERGILPMLR RATLVQTFGQ KNHVCLKEGS IIIPPYAPPQ KMQAHLIPPD TPRSIFVYFR 240 GLFYDNGNDP EGGYYARGTR ASLWENFKNN PLFDISTDHP ATYYEDMQRA VFCLCPLGWA 300 PWSPRLVEAV VFGCIPVIIA DDIVLPFADA IPWEEIGVFV DEEDVPKLDS ILTSIPVEDI 360 LRKQRLLANP SMKKAMLFPQ PAQPRDAFHQ ILNGLARKLP HTQRVYLQPG EKHLNWTAGP 420 VGDLKSW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-84 | 60 | 355 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD26319.1 | 0 | 41 | 427 | 47 | 433 | putative pectin-glucuronyltransferase [Oryza sativa Japonica Group] |
GenBank | EAZ23244.1 | 0 | 41 | 427 | 47 | 433 | hypothetical protein OsJ_06939 [Oryza sativa Japonica Group] |
RefSeq | NP_001052673.1 | 0 | 34 | 427 | 27 | 420 | Os04g0398600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446363.1 | 0 | 39 | 427 | 42 | 430 | hypothetical protein SORBIDRAFT_06g014730 [Sorghum bicolor] |
RefSeq | XP_002452172.1 | 0 | 1 | 427 | 1 | 432 | hypothetical protein SORBIDRAFT_04g021180 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |