y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s110_97V6.1 |
Family | GT47 |
Protein Properties | Length: 797 Molecular Weight: 90031.9 Isoelectric Point: 6.8599 |
Chromosome | Chromosome/Scaffold: 110 Start: 710672 End: 715608 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 373 | 728 | 0 |
KKRPLVYVYDLPAEFTTQFLQGRHFKFECVNRLYDVDNATIWTENLYGAGIALYESLLASEHRTTNGDEADFFYVPFLQACIVEQGDAAPHLTFQGKYMG LRQYFAGDYSKQIYFHIQQNYPYWNRSAGRDHIWFFPWDEGACSAPKEIWNSMMLSHWGNTNAKHKASTTAYRADNWDLIPPEWRGDHPCYDPAKDLVLP AWKFPDPYPIVQNLSSRHRQDRPTLFYFNGNLGSAYDNGRPEPGYSMGIRQKLAAEFGSQPNKKGLLGRQAVDDVVVQAQRSPQYKLELSKSRFCGVLPG DGWSGRMEDSILSGCIPVIIQDGIHLPFENVLDYESFTVRVAEDNIHNLITILKAI |
Full Sequence |
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Protein Sequence Length: 797 Download |
MGIHWWSWQV VVPGLSLVVL VVATHLFVTP LVPTFSVDPN ALVIHRINGT YEWNAERDRS 60 CEKEHGAVVY RNATWKADVG CWLSQCGNSS FPIPVVEKFW RNSCTFECDG RGVCNKELAQ 120 CRCSVGFSGV GCEKVINRKC NKGVTDEQPY GSWGVSVCPG FCDKRTAHCL CGNTTKYPDR 180 PLAEACGFHS KGNTGEIDWT KADTDYIYGN KSYQGWCNLD AEDVHDKNIR VKLPQCDCKY 240 DGQWGVVCES PSESFCINQC NLNGICHQGF CANLLSRFHC VVAKQINGFK SSVCSSDLKE 300 SGMLVGLRMF YAGLVTCSFS WIVQCRKGWY GVDCSVPSYL PPPVQRPKWL PQEAAPDVSD 360 ETNRISVASN IMKKRPLVYV YDLPAEFTTQ FLQGRHFKFE CVNRLYDVDN ATIWTENLYG 420 AGIALYESLL ASEHRTTNGD EADFFYVPFL QACIVEQGDA APHLTFQGKY MGLRQYFAGD 480 YSKQIYFHIQ QNYPYWNRSA GRDHIWFFPW DEGACSAPKE IWNSMMLSHW GNTNAKHKAS 540 TTAYRADNWD LIPPEWRGDH PCYDPAKDLV LPAWKFPDPY PIVQNLSSRH RQDRPTLFYF 600 NGNLGSAYDN GRPEPGYSMG IRQKLAAEFG SQPNKKGLLG RQAVDDVVVQ AQRSPQYKLE 660 LSKSRFCGVL PGDGWSGRME DSILSGCIPV IIQDGIHLPF ENVLDYESFT VRVAEDNIHN 720 LITILKAINE AQVDSMLAVV RGLWQRFTYH YAVKLEANRQ KLKLNKEDLW ASVQNSLTGD 780 DAFSTFIHVR FSLSDQ* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-65 | 372 | 728 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN39924.1 | 0 | 40 | 789 | 52 | 750 | unknown [Picea sitchensis] |
RefSeq | NP_191322.3 | 0 | 6 | 789 | 9 | 760 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | NP_974452.1 | 0 | 6 | 789 | 9 | 758 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_001769121.1 | 0 | 25 | 789 | 25 | 737 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002277596.1 | 0 | 7 | 789 | 11 | 762 | PREDICTED: hypothetical protein [Vitis vinifera] |