y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si009832m |
Family | GT47 |
Protein Properties | Length: 523 Molecular Weight: 58409 Isoelectric Point: 6.9185 |
Chromosome | Chromosome/Scaffold: 7 Start: 18452767 End: 18456176 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 155 | 449 | 0 |
RLKVFIYDLPRKYNKKMVTKDPRCLNHMFAAEIFMHRFLLSSAVRTLNPKEADWFYTPVYTTCDLTNAGLPLPFKSPRVMRSAIQYISNKWPFWNRTDGA DHFFVVPHDFAACFHYQEEKAIERGILPLLRRATLVQTFGQENHVCLKEGSIIIPPYAPPQKMQAHLISPDTPRSIFVYFRGLFYDTGNDPEGGYYARGA RASLWENFKSNPLFDISTDHPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVEEKDVPKLDTILTS |
Full Sequence |
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Protein Sequence Length: 523 Download |
MVTGVAKRVA SAEGWDEVNS NLMNQHANRE FHRILWHESL RMMGGGQREG ENMWLARSPI 60 SLLPLYTEFP NPIPSSSSPL LPREVETGAG VPSGMGSRTG WLPVALLLLA ASALAPRVAA 120 AAGGGGGEAE HAVQQHSERI SGSAGDVLED NPVGRLKVFI YDLPRKYNKK MVTKDPRCLN 180 HMFAAEIFMH RFLLSSAVRT LNPKEADWFY TPVYTTCDLT NAGLPLPFKS PRVMRSAIQY 240 ISNKWPFWNR TDGADHFFVV PHDFAACFHY QEEKAIERGI LPLLRRATLV QTFGQENHVC 300 LKEGSIIIPP YAPPQKMQAH LISPDTPRSI FVYFRGLFYD TGNDPEGGYY ARGARASLWE 360 NFKSNPLFDI STDHPATYYE DMQRAVFCLC PLGWAPWSPR LVEAVVFGCI PVIIADDIVL 420 PFADAIPWEE IGVFVEEKDV PKLDTILTSM PIDDILRKQR LLANPSMKQA MLFPQPAQPR 480 DAFHQILNGL ARKLPHPEGT YLQPGDQRLN WTAGPVGDLK PW* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-85 | 155 | 450 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84255.1 | 0 | 95 | 522 | 1 | 427 | unknown [Zea mays] |
RefSeq | NP_001052673.1 | 0 | 126 | 522 | 24 | 420 | Os04g0398600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149267.1 | 0 | 127 | 522 | 32 | 427 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | XP_002446363.1 | 0 | 131 | 522 | 39 | 430 | hypothetical protein SORBIDRAFT_06g014730 [Sorghum bicolor] |
RefSeq | XP_002452172.1 | 0 | 97 | 522 | 4 | 432 | hypothetical protein SORBIDRAFT_04g021180 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO846508 | 325 | 199 | 523 | 0 |
GO872051 | 326 | 165 | 490 | 0 |
GT033383 | 310 | 214 | 523 | 0 |
GO868810 | 331 | 168 | 498 | 0 |
CK370882 | 289 | 189 | 477 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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