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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00003745m |
Family | GT47 |
Protein Properties | Length: 753 Molecular Weight: 85095.4 Isoelectric Point: 6.7125 |
Chromosome | Chromosome/Scaffold: 031731 Start: 173 End: 5118 |
Description | exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 337 | 691 | 0 |
KKRPLIYVYDLPAELDSHLLEGRHFKFQCVNRIYDDRNRTLWTQQLYGAQMALYESILASPHRTLNGEEADYFYVPVLDSCLITRSDDTPHLLMPRDLRL RSYHALEYYRMAYDHIAQQYPYWNRTSGRDHIWFFSWDEGACYAPREIWNSMMLVHWGNTNTKHRNSTTAYWADNWDPIPLDRRGNHPCFDPRKDLVLPA WKGPDPGAIWLKLWARPRINRTTLFYFNGNLGQAYEGGRPEDTYSMGIRQKLAAQFGSTPNKQGKLGRQHAADVTVTYLRTEKYYEELASSVFCGVLPGD GWSGRMEDSMLQGCIPVIIQDGIFLPYENVLNYNSFAVRVQEDDIPNLISTLRGI |
Full Sequence |
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Protein Sequence Length: 753 Download |
MLAIRSTKCS VAFVGAAGAL VVLVTAVHVF MVPILPSSLD YFGARGSVGH PRNATPGVGV 60 VDSRLRGHFP SDSHGAVAFR GAPWKAEVGR WLAGCHANSS SVNITERIGA KRCEKDCSGR 120 GVCNYDLGEC RCFHGYSGKG CEEVLKLECN LPSSPEWPAG RWIVSMCAAH CDTTRAMCFC 180 GPGTKYPDRP VAEACGFKTI LPAKPDDPKL TDWKTPDLEN VFTTNGSKSG WCNVVPEDAY 240 SSKVKYKEEC DCKYDGLWGQ FCETHVECSC INQCSGHGHC HDGFCQCDSG YFGIDCSIPS 300 AYSLAYDWPS WLQPPVNLPD MKILSSTPIN VKAIVQKKRP LIYVYDLPAE LDSHLLEGRH 360 FKFQCVNRIY DDRNRTLWTQ QLYGAQMALY ESILASPHRT LNGEEADYFY VPVLDSCLIT 420 RSDDTPHLLM PRDLRLRSYH ALEYYRMAYD HIAQQYPYWN RTSGRDHIWF FSWDEGACYA 480 PREIWNSMML VHWGNTNTKH RNSTTAYWAD NWDPIPLDRR GNHPCFDPRK DLVLPAWKGP 540 DPGAIWLKLW ARPRINRTTL FYFNGNLGQA YEGGRPEDTY SMGIRQKLAA QFGSTPNKQG 600 KLGRQHAADV TVTYLRTEKY YEELASSVFC GVLPGDGWSG RMEDSMLQGC IPVIIQDGIF 660 LPYENVLNYN SFAVRVQEDD IPNLISTLRG INETQVEFML GNVRQMWQRF FYRDSILLEA 720 QRQKRLFSEE APWSVEVSKL PDDDDVFATF IQ* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00054 | EGF_CA | 0.003 | 267 | 296 | 34 | + Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. | ||
pfam07974 | EGF_2 | 0.0001 | 268 | 296 | 31 | + EGF-like domain. This family contains EGF domains found in a variety of extracellular proteins. | ||
pfam03016 | Exostosin | 1.0e-68 | 336 | 691 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29877.1 | 0 | 4 | 752 | 33 | 789 | unnamed protein product [Vitis vinifera] |
GenBank | EAZ25771.1 | 0 | 4 | 752 | 1 | 748 | hypothetical protein OsJ_09611 [Oryza sativa Japonica Group] |
GenBank | EEC74609.1 | 0 | 4 | 752 | 1 | 706 | hypothetical protein OsI_10218 [Oryza sativa Indica Group] |
RefSeq | NP_001049126.1 | 0 | 132 | 689 | 8 | 564 | Os03g0174300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002277596.1 | 0 | 4 | 752 | 5 | 761 | PREDICTED: hypothetical protein [Vitis vinifera] |