y
Basic Information | |
---|---|
Species | Arabidopsis lyrata |
Cazyme ID | 489149 |
Family | GT47 |
Protein Properties | Length: 466 Molecular Weight: 53374.4 Isoelectric Point: 10.1041 |
Chromosome | Chromosome/Scaffold: 6 Start: 9687685 End: 9689981 |
Description | FRA8 homolog |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT47 | 109 | 408 | 0 |
GMKIYVYDLPASFNDDWVTASDRCATHLFAAEVAIHRALLSSDVRTLDPEEADFFFVPVYVSCNFSTSNGFPSLSHARSLLSSAVDFLSDHYPFWNRTQG SDHVFVASHDFGACFHAMEDMAIEEGIPEFMKKSIILQTFGVKYKHPCQEVEHVVIPPYIPPESVQRAIEKAPANGRRDIWAFFRGKMEVNPKNISGRFY SKGVRTAILKKFGGRRRFYLNRHRFAGYRSEIVRSVFCLCPLGWAPWSPRLVESAVLGCVPVVIADGIKLPFSETVRWPEISLTVAEKDVRSLRKILEHV |
Full Sequence |
---|
Protein Sequence Length: 466 Download |
MSLDIKRPNI NKTKKKKTGF VVKMQLNNNN RGGNKRNIFI FFFFRNYYTW ILWFFLSLYF 60 FTSYFSVEDQ SPPSSIRLLS NHKTSSSLPS RALIESSAIK TNSFGLFSGM KIYVYDLPAS 120 FNDDWVTASD RCATHLFAAE VAIHRALLSS DVRTLDPEEA DFFFVPVYVS CNFSTSNGFP 180 SLSHARSLLS SAVDFLSDHY PFWNRTQGSD HVFVASHDFG ACFHAMEDMA IEEGIPEFMK 240 KSIILQTFGV KYKHPCQEVE HVVIPPYIPP ESVQRAIEKA PANGRRDIWA FFRGKMEVNP 300 KNISGRFYSK GVRTAILKKF GGRRRFYLNR HRFAGYRSEI VRSVFCLCPL GWAPWSPRLV 360 ESAVLGCVPV VIADGIKLPF SETVRWPEIS LTVAEKDVRS LRKILEHVAA TNLSVIQRNL 420 HGPVFKRALL YNVPMKEGDA TWHILESLWR KLDDRSYRRS RVLSQ* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 9.0e-73 | 108 | 405 | 305 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10615.1 | 0 | 1 | 465 | 1 | 493 | unnamed protein product [Arabidopsis thaliana] |
RefSeq | NP_197685.2 | 0 | 1 | 465 | 1 | 464 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
RefSeq | XP_002275679.1 | 0 | 3 | 453 | 2 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314302.1 | 0 | 1 | 465 | 1 | 462 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523710.1 | 0 | 12 | 465 | 6 | 461 | transferase, putative [Ricinus communis] |