y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00048254m |
Family | GT47 |
Protein Properties | Length: 416 Molecular Weight: 46754.1 Isoelectric Point: 6.8326 |
Chromosome | Chromosome/Scaffold: 016382 Start: 1230 End: 4062 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 48 | 343 | 0 |
RLKVYVYELPTKYNKKMVAKDSRCLSHMFAAEIFMHRFLLSSAIRTLNPEEADWFYTPVYTTCDLTPWGHPLPFKSPRIMRSAIQFISKHWPYWNRTEGA DHFFVVPHDFGACFHYQEEKAIERGVLPLLRRATLVQTFGQKDHVCLKEGSITIPPYAPPQKMKTHLVPPETPRSIFVYFRGLFYDTANDPEGGYYARGA RASVWENFKNNPLFDISADHPPTYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVAEDDVPKLDTILTSI |
Full Sequence |
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Protein Sequence Length: 416 Download |
MGTGGAPAPA LALALLLACA HVALVAAQDT ERIEGSAGDV LEDDPVGRLK VYVYELPTKY 60 NKKMVAKDSR CLSHMFAAEI FMHRFLLSSA IRTLNPEEAD WFYTPVYTTC DLTPWGHPLP 120 FKSPRIMRSA IQFISKHWPY WNRTEGADHF FVVPHDFGAC FHYQEEKAIE RGVLPLLRRA 180 TLVQTFGQKD HVCLKEGSIT IPPYAPPQKM KTHLVPPETP RSIFVYFRGL FYDTANDPEG 240 GYYARGARAS VWENFKNNPL FDISADHPPT YYEDMQRAVF CLCPLGWAPW SPRLVEAVVF 300 GCIPVIIADD IVLPFADAIP WEEIGVFVAE DDVPKLDTIL TSIPMEVILR KQRLLANPSM 360 KQAMLFPQPA QPGDAFHQIL NGLVRKLPHG KDVFLKPGQK VLNWTEGPRG DLKPW* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-83 | 48 | 343 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG31432.1 | 0 | 1 | 415 | 1 | 419 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | NP_001045263.1 | 0 | 27 | 415 | 27 | 415 | Os01g0926600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130448.1 | 0 | 1 | 415 | 1 | 415 | hypothetical protein LOC100191546 [Zea mays] |
RefSeq | NP_001142343.1 | 0 | 1 | 415 | 1 | 419 | hypothetical protein LOC100274514 [Zea mays] |
RefSeq | XP_002459016.1 | 0 | 27 | 415 | 29 | 417 | hypothetical protein SORBIDRAFT_03g044520 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |