y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10029035m |
Family | GT47 |
Protein Properties | Length: 274 Molecular Weight: 31641.9 Isoelectric Point: 7.9633 |
Chromosome | Chromosome/Scaffold: 8 Start: 21314285 End: 21316727 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 102 | 269 | 5.3e-38 |
DLKIYVYELPSKYNTDWLSNERCSNHLFASEVAIHRALLNDDVIRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARTLISSAIQLISSQYPFWNRTHG SDHVFVASHDYGACFHAMEDRAIADGIPEFLKKSIILQTFGVKYQHPCQEVENVVIPPYVSPEGENGH |
Full Sequence |
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Protein Sequence Length: 274 Download |
MEELLKRPTK RRGFYVEMRL LHKNGRQQQQ LEKNSCFKYY KWVLWFSLTL YFFSSYFISH 60 NKPIPLSRTH FSNSKSNLPS RALIESVNTT SLQHPTRGAL EDLKIYVYEL PSKYNTDWLS 120 NERCSNHLFA SEVAIHRALL NDDVIRTFDP YEADFFFVPV YVSCNFSTVN GFPAIGHART 180 LISSAIQLIS SQYPFWNRTH GSDHVFVASH DYGACFHAME DRAIADGIPE FLKKSIILQT 240 FGVKYQHPCQ EVENVVIPPY VSPEGENGHM EKI* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-29 | 103 | 273 | 175 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33322.1 | 0 | 18 | 272 | 1 | 257 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
GenBank | ABI64067.1 | 0 | 18 | 272 | 1 | 257 | glycosyltransferase GT47C [Populus tremula x Populus alba] |
RefSeq | XP_002275679.1 | 0 | 7 | 264 | 6 | 259 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314302.1 | 0 | 5 | 271 | 5 | 276 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523710.1 | 0 | 1 | 272 | 1 | 276 | transferase, putative [Ricinus communis] |