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Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g057500.1 |
Family | GT47 |
Protein Properties | Length: 428 Molecular Weight: 49113.3 Isoelectric Point: 10.3434 |
Chromosome | Chromosome/Scaffold: 4 Start: 17684105 End: 17685939 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 67 | 366 | 0 |
KNLKIFVYDLPPKYNKNWLKNPRCKTHLFASEVAIHRALLTSDVRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLISSAVKLISTEYPFWNRSTG SDHVFVASHDFGSCFHTLEDVAMKDGVPEIMKNSIVLQTFGVTYDHPCQKVEHVVIPPFVSPESVRNTLENFPVNGRRDIWVFFRGKMEVHPKNVSGRFY SKKVRTVIWKKFNGDRRFYLRRHRFAGYQSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVIIADSIRLPFSSAVNWPEISVTVAEKDVWRLGEILEKV |
Full Sequence |
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Protein Sequence Length: 428 Download |
MDQNHKKKPS KNKGYYVKMK LINNNNHNHN NNIKHHQITS TIKSLSQSLS IKKTTSSPQT 60 LQKTSLKNLK IFVYDLPPKY NKNWLKNPRC KTHLFASEVA IHRALLTSDV RTFDPYEADF 120 FFVPVYVSCN FSTVNGFPAI GHARSLISSA VKLISTEYPF WNRSTGSDHV FVASHDFGSC 180 FHTLEDVAMK DGVPEIMKNS IVLQTFGVTY DHPCQKVEHV VIPPFVSPES VRNTLENFPV 240 NGRRDIWVFF RGKMEVHPKN VSGRFYSKKV RTVIWKKFNG DRRFYLRRHR FAGYQSEIAR 300 SVFCLCPLGW APWSPRLVES VALGCVPVII ADSIRLPFSS AVNWPEISVT VAEKDVWRLG 360 EILEKVAATN LSIIQRNLWD PRTRKALLFN SRVHEGDATW QVLHSLSEKV DRSYRSSRVS 420 RQLEFDT* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-78 | 65 | 366 | 310 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33322.1 | 0 | 59 | 420 | 78 | 440 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
GenBank | ABI64067.1 | 0 | 59 | 422 | 78 | 442 | glycosyltransferase GT47C [Populus tremula x Populus alba] |
RefSeq | XP_002275679.1 | 0 | 8 | 411 | 6 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314302.1 | 0 | 59 | 422 | 98 | 462 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523710.1 | 0 | 8 | 422 | 6 | 461 | transferase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797103 | 374 | 58 | 428 | 0 |
CK261693 | 316 | 93 | 408 | 0 |
DY287013 | 312 | 101 | 411 | 0 |
FC898195 | 280 | 103 | 381 | 0 |
EG481525 | 274 | 66 | 337 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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