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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb09g022500.1 |
Family | GT47 |
Protein Properties | Length: 423 Molecular Weight: 47209.3 Isoelectric Point: 6.8351 |
Chromosome | Chromosome/Scaffold: 9 Start: 52158945 End: 52160917 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 53 | 350 | 0 |
KLKVFVYDLPAKYNTKPVEKDPRCLTHMFATEIFVHRSLLSSAVRTLDPEEADWFYTPVYTTCDLTASGHPMPFDSPRMMRSAIRLIADRWPYWNRSEGA DHFFVTPHDFGACFHFQEEKAMARGILPVLRRATLVQTFGQRNHVCLKDGGGSITIPPYAPPWKMEAQLLPPATPRSIFVYFRGLFYDAGNDPEGGYYAR GARASVWENFKSNPLFDISTAHPTTYYQDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVVIADDIVLPFADAIPWADIGVFVAEDDVPRLDTILTSI |
Full Sequence |
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Protein Sequence Length: 423 Download |
MKMRSIFAIA ILAATTAVVL FHGSDAQELM QSHHTERISG SGGDVLEDDP VGKLKVFVYD 60 LPAKYNTKPV EKDPRCLTHM FATEIFVHRS LLSSAVRTLD PEEADWFYTP VYTTCDLTAS 120 GHPMPFDSPR MMRSAIRLIA DRWPYWNRSE GADHFFVTPH DFGACFHFQE EKAMARGILP 180 VLRRATLVQT FGQRNHVCLK DGGGSITIPP YAPPWKMEAQ LLPPATPRSI FVYFRGLFYD 240 AGNDPEGGYY ARGARASVWE NFKSNPLFDI STAHPTTYYQ DMQRAVFCLC PLGWAPWSPR 300 LVEAVVFGCI PVVIADDIVL PFADAIPWAD IGVFVAEDDV PRLDTILTSI PVEVVLRKQR 360 LLASPAMKRA VLFPQPAQPG DAFHQILNGL ARKLPHGDDA FLRNGQTVLN WTAGPPRDLK 420 PW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-80 | 53 | 350 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG31432.1 | 0 | 12 | 422 | 11 | 419 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | NP_001045264.1 | 0 | 27 | 422 | 24 | 417 | Os01g0926700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130448.1 | 0 | 29 | 422 | 24 | 415 | hypothetical protein LOC100191546 [Zea mays] |
RefSeq | NP_001149319.1 | 0 | 25 | 422 | 26 | 421 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
RefSeq | XP_002441217.1 | 0 | 1 | 422 | 1 | 422 | hypothetical protein SORBIDRAFT_09g022500 [Sorghum bicolor] |