Genome Details
Selected Rep_genome_ID: HRGMv2_4190
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4190 | 4,519,106 | 97.86% | 1.691% | Ethiopia | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4190_CGC28 | CGCFAM_00177 | Yes | 9 | 2 | beta-glucan |
| HRGMv2_4190_CGC7 | CGCFAM_00399 | Yes | 5 | 1 | |
| HRGMv2_4190_CGC1 | CGCFAM_00433 | Yes | 7 | 1 | |
| HRGMv2_4190_CGC6 | CGCFAM_00435 | Yes | 9 | 1 | |
| HRGMv2_4190_CGC12 | CGCFAM_00473 | Yes | 7 | 2 | |
| HRGMv2_4190_CGC41 | CGCFAM_00572 | Yes | 3 | 1 | |
| HRGMv2_4190_CGC2 | CGCFAM_00790 | Yes | 9 | 1 | |
| HRGMv2_4190_CGC37 | CGCFAM_01373 | Yes | 5 | 2 | |
| HRGMv2_4190_CGC39 | CGCFAM_02021 | Yes | 3 | 1 | |
| HRGMv2_4190_CGC25 | CGCFAM_02286 | Yes | 6 | 1 | galactan |
| HRGMv2_4190_CGC15 | CGCFAM_02536 | Yes | 9 | 4 | |
| HRGMv2_4190_CGC14 | CGCFAM_02886 | Yes | 12 | 1 | |
| HRGMv2_4190_CGC32 | CGCFAM_03307 | Yes | 4 | 2 | |
| HRGMv2_4190_CGC26 | CGCFAM_03989 | Yes | 4 | 1 | |
| HRGMv2_4190_CGC13 | CGCFAM_04140 | Yes | 8 | 1 | host glycan |
| HRGMv2_4190_CGC40 | CGCFAM_06273 | Yes | 5 | 1 | |
| HRGMv2_4190_CGC47 | CGCFAM_08480 | Yes | 3 | 2 |
Top CAZyme Families