Cluster: HRGMv2_4190_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4190
- CGC Family ID: CGCFAM_00399
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4190_10 | HRGMv2_4190_10_26 | 28542 | 29204 | - | 2.A.53.3.8 |
| TC | HRGMv2_4190_10 | HRGMv2_4190_10_27 | 29372 | 30298 | + | 3.A.1.105.17 |
| TC | HRGMv2_4190_10 | HRGMv2_4190_10_28 | 30298 | 31065 | + | 3.A.1.105.17 |
| CAZyme | HRGMv2_4190_10 | HRGMv2_4190_10_29 | 31107 | 32657 | - | AA1 |
| TC | HRGMv2_4190_10 | HRGMv2_4190_10_30 | 32904 | 33251 | + | 8.A.2.1.3 |
Gene ID: HRGMv2_4190_10_26
Type: TC
Location: 28542 - 29204 (-)
Type: TC
Location: 28542 - 29204 (-)
Gene ID: HRGMv2_4190_10_27
Type: TC
Location: 29372 - 30298 (+)
Type: TC
Location: 29372 - 30298 (+)
Gene ID: HRGMv2_4190_10_28
Type: TC
Location: 30298 - 31065 (+)
Type: TC
Location: 30298 - 31065 (+)
Gene ID: HRGMv2_4190_10_29
Type: CAZyme
Location: 31107 - 32657 (-)
Type: CAZyme
Location: 31107 - 32657 (-)
Gene ID: HRGMv2_4190_10_30
Type: TC
Location: 32904 - 33251 (+)
Type: TC
Location: 32904 - 33251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.