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Cluster: HRGMv2_4190_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4190_4 HRGMv2_4190_4_32 31192 32853 + 2.A.81.1.5
TC HRGMv2_4190_4 HRGMv2_4190_4_33 32912 33274 + 9.B.51.1.1
pfam HRGMv2_4190_4 HRGMv2_4190_4_34 33264 33623 + DUF202
NULL(UNKNOWN) HRGMv2_4190_4 HRGMv2_4190_4_35 33623 34570 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4190_4 HRGMv2_4190_4_36 34647 35756 + GH5_25
TC HRGMv2_4190_4 HRGMv2_4190_4_37 35674 36867 - 2.A.1.2.9
TC HRGMv2_4190_4 HRGMv2_4190_4_38 37568 38974 + 9.B.18.1.1
pfam HRGMv2_4190_4 HRGMv2_4190_4_39 38958 40250 + BBP2_2
TC HRGMv2_4190_4 HRGMv2_4190_4_40 40252 40803 + 1.B.18.1.1
Gene ID: HRGMv2_4190_4_32
Type: TC
Location: 31192 - 32853 (+)
Gene ID: HRGMv2_4190_4_33
Type: TC
Location: 32912 - 33274 (+)
Gene ID: HRGMv2_4190_4_34
Type: pfam
Location: 33264 - 33623 (+)
Gene ID: HRGMv2_4190_4_35
Type:
Location: 33623 - 34570 (+)
Gene ID: HRGMv2_4190_4_36
Type: CAZyme
Location: 34647 - 35756 (+)
Gene ID: HRGMv2_4190_4_37
Type: TC
Location: 35674 - 36867 (-)
Gene ID: HRGMv2_4190_4_38
Type: TC
Location: 37568 - 38974 (+)
Gene ID: HRGMv2_4190_4_39
Type: pfam
Location: 38958 - 40250 (+)
Gene ID: HRGMv2_4190_4_40
Type: TC
Location: 40252 - 40803 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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