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Cluster: HRGMv2_4190_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4190_22 HRGMv2_4190_22_9 9940 10710 + 3.A.1.17.1
TC HRGMv2_4190_22 HRGMv2_4190_22_10 10710 11486 + 3.A.1.17.1
TF HRGMv2_4190_22 HRGMv2_4190_22_11 11832 12665 + HTH_AraC
TC HRGMv2_4190_22 HRGMv2_4190_22_12 12725 14968 - 1.B.14.1.6
NULL(UNKNOWN) HRGMv2_4190_22 HRGMv2_4190_22_13 15120 15500 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4190_22 HRGMv2_4190_22_14 15820 16902 + LacI
CAZyme HRGMv2_4190_22 HRGMv2_4190_22_15 17023 20100 + GH2
TC HRGMv2_4190_22 HRGMv2_4190_22_16 20153 21409 + 2.A.1.5.1
Gene ID: HRGMv2_4190_22_9
Type: TC
Location: 9940 - 10710 (+)
Gene ID: HRGMv2_4190_22_10
Type: TC
Location: 10710 - 11486 (+)
Gene ID: HRGMv2_4190_22_11
Type: TF
Location: 11832 - 12665 (+)
Gene ID: HRGMv2_4190_22_12
Type: TC
Location: 12725 - 14968 (-)
Gene ID: HRGMv2_4190_22_13
Type:
Location: 15120 - 15500 (-)
Gene ID: HRGMv2_4190_22_14
Type: TF
Location: 15820 - 16902 (+)
Gene ID: HRGMv2_4190_22_15
Type: CAZyme
Location: 17023 - 20100 (+)
Gene ID: HRGMv2_4190_22_16
Type: TC
Location: 20153 - 21409 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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