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Cluster: HRGMv2_4190_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4190_110 HRGMv2_4190_110_1 2 1789 + 9.B.34.1.4
TF HRGMv2_4190_110 HRGMv2_4190_110_2 1786 2700 - HTH_1
CAZyme HRGMv2_4190_110 HRGMv2_4190_110_3 2797 3804 - GH8
pfam HRGMv2_4190_110 HRGMv2_4190_110_4 3845 4327 - Cellsynth_D
TC HRGMv2_4190_110 HRGMv2_4190_110_5 4330 5532 - 1.B.55.3.1
pfam HRGMv2_4190_110 HRGMv2_4190_110_6 5599 8013 - TPR_16 | TPR_16 | TPR_19 | TPR_19 | TPR_19
NULL(UNKNOWN) HRGMv2_4190_110 HRGMv2_4190_110_7 8053 8181 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4190_110 HRGMv2_4190_110_8 8192 10609 - 4.D.3.1.6
CAZyme HRGMv2_4190_110 HRGMv2_4190_110_9 10606 12657 - GT2
Gene ID: HRGMv2_4190_110_1
Type: TC
Location: 2 - 1789 (+)
Gene ID: HRGMv2_4190_110_2
Type: TF
Location: 1786 - 2700 (-)
Gene ID: HRGMv2_4190_110_3
Type: CAZyme
Location: 2797 - 3804 (-)
Gene ID: HRGMv2_4190_110_4
Type: pfam
Location: 3845 - 4327 (-)
Gene ID: HRGMv2_4190_110_5
Type: TC
Location: 4330 - 5532 (-)
Gene ID: HRGMv2_4190_110_6
Type: pfam
Location: 5599 - 8013 (-)
Gene ID: HRGMv2_4190_110_7
Type:
Location: 8053 - 8181 (-)
Gene ID: HRGMv2_4190_110_8
Type: TC
Location: 8192 - 10609 (-)
Gene ID: HRGMv2_4190_110_9
Type: CAZyme
Location: 10606 - 12657 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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