Cluster: HRGMv2_4190_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4190
- CGC Family ID: CGCFAM_00433
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4190_1 | HRGMv2_4190_1_65 | 65151 | 66800 | - | GH13_29 |
| TC | HRGMv2_4190_1 | HRGMv2_4190_1_66 | 66853 | 68271 | - | 4.A.1.2.4 |
| TF | HRGMv2_4190_1 | HRGMv2_4190_1_67 | 68422 | 69378 | - | LacI |
| TC | HRGMv2_4190_1 | HRGMv2_4190_1_68 | 69762 | 72479 | + | 3.A.3.4.1 |
| TC | HRGMv2_4190_1 | HRGMv2_4190_1_69 | 72797 | 73774 | + | 2.A.56.1.5 |
| pfam | HRGMv2_4190_1 | HRGMv2_4190_1_70 | 73843 | 74352 | + | DctQ |
| TC | HRGMv2_4190_1 | HRGMv2_4190_1_71 | 74380 | 75666 | + | 2.A.56.1.5 |
Gene ID: HRGMv2_4190_1_65
Type: CAZyme
Location: 65151 - 66800 (-)
Type: CAZyme
Location: 65151 - 66800 (-)
Gene ID: HRGMv2_4190_1_66
Type: TC
Location: 66853 - 68271 (-)
Type: TC
Location: 66853 - 68271 (-)
Gene ID: HRGMv2_4190_1_67
Type: TF
Location: 68422 - 69378 (-)
Type: TF
Location: 68422 - 69378 (-)
Gene ID: HRGMv2_4190_1_68
Type: TC
Location: 69762 - 72479 (+)
Type: TC
Location: 69762 - 72479 (+)
Gene ID: HRGMv2_4190_1_69
Type: TC
Location: 72797 - 73774 (+)
Type: TC
Location: 72797 - 73774 (+)
Gene ID: HRGMv2_4190_1_70
Type: pfam
Location: 73843 - 74352 (+)
Type: pfam
Location: 73843 - 74352 (+)
Gene ID: HRGMv2_4190_1_71
Type: TC
Location: 74380 - 75666 (+)
Type: TC
Location: 74380 - 75666 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.