Cluster: HRGMv2_4190_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4190
- CGC Family ID: CGCFAM_00473
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4190_21 | HRGMv2_4190_21_3 | 2169 | 4226 | - | GH13_19 |
| CAZyme | HRGMv2_4190_21 | HRGMv2_4190_21_4 | 4541 | 5428 | + | GH73 |
| TF | HRGMv2_4190_21 | HRGMv2_4190_21_5 | 5805 | 6983 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4190_21 | HRGMv2_4190_21_6 | 7077 | 8558 | - | 2.A.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_4190_21 | HRGMv2_4190_21_7 | 8969 | 10291 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4190_21 | HRGMv2_4190_21_8 | 10345 | 11799 | + | FGGY_N | FGGY_C |
| TC | HRGMv2_4190_21 | HRGMv2_4190_21_9 | 11981 | 12973 | - | 9.B.97.1.1 |
Gene ID: HRGMv2_4190_21_3
Type: CAZyme
Location: 2169 - 4226 (-)
Type: CAZyme
Location: 2169 - 4226 (-)
Gene ID: HRGMv2_4190_21_4
Type: CAZyme
Location: 4541 - 5428 (+)
Type: CAZyme
Location: 4541 - 5428 (+)
Gene ID: HRGMv2_4190_21_5
Type: TF
Location: 5805 - 6983 (-)
Type: TF
Location: 5805 - 6983 (-)
Gene ID: HRGMv2_4190_21_6
Type: TC
Location: 7077 - 8558 (-)
Type: TC
Location: 7077 - 8558 (-)
Gene ID: HRGMv2_4190_21_7
Type:
Location: 8969 - 10291 (+)
Type:
Location: 8969 - 10291 (+)
Gene ID: HRGMv2_4190_21_8
Type: pfam
Location: 10345 - 11799 (+)
Type: pfam
Location: 10345 - 11799 (+)
Gene ID: HRGMv2_4190_21_9
Type: TC
Location: 11981 - 12973 (-)
Type: TC
Location: 11981 - 12973 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.