Genome Details
Selected Rep_genome_ID: HRGMv2_3877
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes cottocaccae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3877 | 2,401,860 | 92.92% | 1.298% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3877_CGC11 | CGCFAM_00001 | Yes | 5 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_3877_CGC15 | CGCFAM_00147 | Yes | 4 | 1 | |
| HRGMv2_3877_CGC36 | CGCFAM_00475 | Yes | 14 | 2 | |
| HRGMv2_3877_CGC12 | CGCFAM_00492 | Yes | 6 | 3 | |
| HRGMv2_3877_CGC3 | CGCFAM_00540 | Yes | 13 | 6 | pectin |
| HRGMv2_3877_CGC20 | CGCFAM_00564 | Yes | 5 | 1 | |
| HRGMv2_3877_CGC13 | CGCFAM_00715 | Yes | 5 | 1 | |
| HRGMv2_3877_CGC14 | CGCFAM_01434 | Yes | 5 | 2 | |
| HRGMv2_3877_CGC22 | CGCFAM_01496 | Yes | 7 | 4 | |
| HRGMv2_3877_CGC24 | CGCFAM_01768 | Yes | 3 | 1 | |
| HRGMv2_3877_CGC29 | CGCFAM_02118 | Yes | 4 | 1 | |
| HRGMv2_3877_CGC34 | CGCFAM_02407 | Yes | 4 | 1 | |
| HRGMv2_3877_CGC10 | CGCFAM_02846 | Yes | 7 | 2 | |
| HRGMv2_3877_CGC16 | CGCFAM_02874 | Yes | 20 | 3 | |
| HRGMv2_3877_CGC7 | CGCFAM_03398 | Yes | 24 | 16 | |
| HRGMv2_3877_CGC23 | CGCFAM_09641 | Yes | 8 | 3 |
Top CAZyme Families