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Cluster: HRGMv2_3877_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3877_19 HRGMv2_3877_19_8 12365 14239 + GH110
CAZyme HRGMv2_3877_19 HRGMv2_3877_19_9 14242 16110 + GH110
CAZyme HRGMv2_3877_19 HRGMv2_3877_19_10 16136 17248 + GH43_24
TC HRGMv2_3877_19 HRGMv2_3877_19_11 17302 20379 + 1.B.14.6.1
pfam HRGMv2_3877_19 HRGMv2_3877_19_12 20392 22002 + SusD_RagB | SusD-like_3
pfam HRGMv2_3877_19 HRGMv2_3877_19_13 22021 23136 + Fib_succ_major
CAZyme HRGMv2_3877_19 HRGMv2_3877_19_14 23162 24859 + GH136
Gene ID: HRGMv2_3877_19_8
Type: CAZyme
Location: 12365 - 14239 (+)
Gene ID: HRGMv2_3877_19_9
Type: CAZyme
Location: 14242 - 16110 (+)
Gene ID: HRGMv2_3877_19_10
Type: CAZyme
Location: 16136 - 17248 (+)
Gene ID: HRGMv2_3877_19_11
Type: TC
Location: 17302 - 20379 (+)
Gene ID: HRGMv2_3877_19_12
Type: pfam
Location: 20392 - 22002 (+)
Gene ID: HRGMv2_3877_19_13
Type: pfam
Location: 22021 - 23136 (+)
Gene ID: HRGMv2_3877_19_14
Type: CAZyme
Location: 23162 - 24859 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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