Cluster: HRGMv2_3877_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3877
- CGC Family ID: CGCFAM_02846
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3877_6 | HRGMv2_3877_6_30 | 41704 | 45021 | - | 1.B.14.6.2 |
| pfam | HRGMv2_3877_6 | HRGMv2_3877_6_31 | 45120 | 46211 | - | BACON |
| TF | HRGMv2_3877_6 | HRGMv2_3877_6_32 | 46391 | 50587 | - | HTH_AraC |
| CAZyme | HRGMv2_3877_6 | HRGMv2_3877_6_33 | 50856 | 53417 | + | GH89 |
| pfam | HRGMv2_3877_6 | HRGMv2_3877_6_34 | 53607 | 54902 | + | MFS_1 | MFS_1 |
| CAZyme | HRGMv2_3877_6 | HRGMv2_3877_6_35 | 54981 | 56987 | - | GH97 |
| TC | HRGMv2_3877_6 | HRGMv2_3877_6_36 | 57240 | 60101 | - | 1.B.14.12.2 |
Gene ID: HRGMv2_3877_6_30
Type: TC
Location: 41704 - 45021 (-)
Type: TC
Location: 41704 - 45021 (-)
Gene ID: HRGMv2_3877_6_31
Type: pfam
Location: 45120 - 46211 (-)
Type: pfam
Location: 45120 - 46211 (-)
Gene ID: HRGMv2_3877_6_32
Type: TF
Location: 46391 - 50587 (-)
Type: TF
Location: 46391 - 50587 (-)
Gene ID: HRGMv2_3877_6_33
Type: CAZyme
Location: 50856 - 53417 (+)
Type: CAZyme
Location: 50856 - 53417 (+)
Gene ID: HRGMv2_3877_6_34
Type: pfam
Location: 53607 - 54902 (+)
Type: pfam
Location: 53607 - 54902 (+)
Gene ID: HRGMv2_3877_6_35
Type: CAZyme
Location: 54981 - 56987 (-)
Type: CAZyme
Location: 54981 - 56987 (-)
Gene ID: HRGMv2_3877_6_36
Type: TC
Location: 57240 - 60101 (-)
Type: TC
Location: 57240 - 60101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes cottocaccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3877_6_34 | vegan > omnivore | 1.73531 | 0.03070 |