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Cluster: HRGMv2_3877_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_1 2 1453 + GT35
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_2 1574 3682 + GH133
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_3 4098 5417 + GT4
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_4 5429 6649 + GH57
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_5 6726 8597 - GH20
NULL(UNKNOWN) HRGMv2_3877_3 HRGMv2_3877_3_6 8645 10147 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3877_3 HRGMv2_3877_3_7 10296 11744 - Mfa_like_1 | F5_F8_type_C_2
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_8 11784 13805 - GH28
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_9 14079 15557 - GH28
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_10 15574 17304 - GH5_38
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_11 17330 18199 - CBM32
TC HRGMv2_3877_3 HRGMv2_3877_3_12 18227 20077 - 8.A.46.1.3
TC HRGMv2_3877_3 HRGMv2_3877_3_13 20100 23207 - 1.B.14.6.1
pfam HRGMv2_3877_3 HRGMv2_3877_3_14 23517 24362 + Metallophos
pfam HRGMv2_3877_3 HRGMv2_3877_3_15 24406 25248 - Exo_endo_phos
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_16 25245 27245 - GH65
pfam HRGMv2_3877_3 HRGMv2_3877_3_17 27312 28421 - DUF5009
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_18 28506 30101 - GH20
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_19 30227 32548 - GH3
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_20 32553 34883 - GH3
TF HRGMv2_3877_3 HRGMv2_3877_3_21 35055 39212 - HTH_AraC
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_22 39374 41686 + GH3
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_23 41815 43716 + GH127
CAZyme HRGMv2_3877_3 HRGMv2_3877_3_24 43760 45481 + GH123
Gene ID: HRGMv2_3877_3_1
Type: CAZyme
Location: 2 - 1453 (+)
Gene ID: HRGMv2_3877_3_2
Type: CAZyme
Location: 1574 - 3682 (+)
Gene ID: HRGMv2_3877_3_3
Type: CAZyme
Location: 4098 - 5417 (+)
Gene ID: HRGMv2_3877_3_4
Type: CAZyme
Location: 5429 - 6649 (+)
Gene ID: HRGMv2_3877_3_5
Type: CAZyme
Location: 6726 - 8597 (-)
Gene ID: HRGMv2_3877_3_6
Type:
Location: 8645 - 10147 (-)
Gene ID: HRGMv2_3877_3_7
Type: pfam
Location: 10296 - 11744 (-)
Gene ID: HRGMv2_3877_3_8
Type: CAZyme
Location: 11784 - 13805 (-)
Gene ID: HRGMv2_3877_3_9
Type: CAZyme
Location: 14079 - 15557 (-)
Gene ID: HRGMv2_3877_3_10
Type: CAZyme
Location: 15574 - 17304 (-)
Gene ID: HRGMv2_3877_3_11
Type: CAZyme
Location: 17330 - 18199 (-)
Gene ID: HRGMv2_3877_3_12
Type: TC
Location: 18227 - 20077 (-)
Gene ID: HRGMv2_3877_3_13
Type: TC
Location: 20100 - 23207 (-)
Gene ID: HRGMv2_3877_3_14
Type: pfam
Location: 23517 - 24362 (+)
Gene ID: HRGMv2_3877_3_15
Type: pfam
Location: 24406 - 25248 (-)
Gene ID: HRGMv2_3877_3_16
Type: CAZyme
Location: 25245 - 27245 (-)
Gene ID: HRGMv2_3877_3_17
Type: pfam
Location: 27312 - 28421 (-)
Gene ID: HRGMv2_3877_3_18
Type: CAZyme
Location: 28506 - 30101 (-)
Gene ID: HRGMv2_3877_3_19
Type: CAZyme
Location: 30227 - 32548 (-)
Gene ID: HRGMv2_3877_3_20
Type: CAZyme
Location: 32553 - 34883 (-)
Gene ID: HRGMv2_3877_3_21
Type: TF
Location: 35055 - 39212 (-)
Gene ID: HRGMv2_3877_3_22
Type: CAZyme
Location: 39374 - 41686 (+)
Gene ID: HRGMv2_3877_3_23
Type: CAZyme
Location: 41815 - 43716 (+)
Gene ID: HRGMv2_3877_3_24
Type: CAZyme
Location: 43760 - 45481 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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