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Cluster: HRGMv2_3877_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3877_9 HRGMv2_3877_9_19 26091 27791 - 4.C.1.1.4
TC HRGMv2_3877_9 HRGMv2_3877_9_20 27822 28517 - 9.B.31.1.2
pfam HRGMv2_3877_9 HRGMv2_3877_9_21 28886 30538 - BACON
pfam HRGMv2_3877_9 HRGMv2_3877_9_22 30556 32184 - SusD_RagB | SusD-like_3
TC HRGMv2_3877_9 HRGMv2_3877_9_23 32195 35263 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_3877_9 HRGMv2_3877_9_24 35277 36380 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3877_9 HRGMv2_3877_9_25 36396 37940 - GH20
pfam HRGMv2_3877_9 HRGMv2_3877_9_26 37971 38714 - Glucosamine_iso
CAZyme HRGMv2_3877_9 HRGMv2_3877_9_27 38746 39909 - CE9
TC HRGMv2_3877_9 HRGMv2_3877_9_28 39903 41147 - 2.A.1.7.9
TF HRGMv2_3877_9 HRGMv2_3877_9_29 41277 42422 - HTH_AraC
TC HRGMv2_3877_9 HRGMv2_3877_9_30 42704 43693 + 2.A.115.1.1
pfam HRGMv2_3877_9 HRGMv2_3877_9_31 43759 45108 + UPF0004 | TRAM | Radical_SAM
TC HRGMv2_3877_9 HRGMv2_3877_9_32 45145 46650 + 1.I.1.1.3
STP HRGMv2_3877_9 HRGMv2_3877_9_33 46685 47296 + cNMP_binding
pfam HRGMv2_3877_9 HRGMv2_3877_9_34 47350 48498 + Acyl_transf_3
CAZyme HRGMv2_3877_9 HRGMv2_3877_9_35 48635 51178 + GH84
pfam HRGMv2_3877_9 HRGMv2_3877_9_36 51350 52654 - GTP_EFTU | MMR_HSR1 | MMR_HSR1 | FeoB_N | FeoB_N | AIG1 | KH_dom-like
TC HRGMv2_3877_9 HRGMv2_3877_9_37 52803 54914 - 2.A.37.2.5
TC HRGMv2_3877_9 HRGMv2_3877_9_38 55204 56361 + 2.A.1.7.16
Gene ID: HRGMv2_3877_9_19
Type: TC
Location: 26091 - 27791 (-)
Gene ID: HRGMv2_3877_9_20
Type: TC
Location: 27822 - 28517 (-)
Gene ID: HRGMv2_3877_9_21
Type: pfam
Location: 28886 - 30538 (-)
Gene ID: HRGMv2_3877_9_22
Type: pfam
Location: 30556 - 32184 (-)
Gene ID: HRGMv2_3877_9_23
Type: TC
Location: 32195 - 35263 (-)
Gene ID: HRGMv2_3877_9_24
Type:
Location: 35277 - 36380 (-)
Gene ID: HRGMv2_3877_9_25
Type: CAZyme
Location: 36396 - 37940 (-)
Gene ID: HRGMv2_3877_9_26
Type: pfam
Location: 37971 - 38714 (-)
Gene ID: HRGMv2_3877_9_27
Type: CAZyme
Location: 38746 - 39909 (-)
Gene ID: HRGMv2_3877_9_28
Type: TC
Location: 39903 - 41147 (-)
Gene ID: HRGMv2_3877_9_29
Type: TF
Location: 41277 - 42422 (-)
Gene ID: HRGMv2_3877_9_30
Type: TC
Location: 42704 - 43693 (+)
Gene ID: HRGMv2_3877_9_31
Type: pfam
Location: 43759 - 45108 (+)
Gene ID: HRGMv2_3877_9_32
Type: TC
Location: 45145 - 46650 (+)
Gene ID: HRGMv2_3877_9_33
Type: STP
Location: 46685 - 47296 (+)
Gene ID: HRGMv2_3877_9_34
Type: pfam
Location: 47350 - 48498 (+)
Gene ID: HRGMv2_3877_9_35
Type: CAZyme
Location: 48635 - 51178 (+)
Gene ID: HRGMv2_3877_9_36
Type: pfam
Location: 51350 - 52654 (-)
Gene ID: HRGMv2_3877_9_37
Type: TC
Location: 52803 - 54914 (-)
Gene ID: HRGMv2_3877_9_38
Type: TC
Location: 55204 - 56361 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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