Cluster: HRGMv2_3877_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: HRGMv2_3877
- CGC Family ID: CGCFAM_00540
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3877_2 | HRGMv2_3877_2_21 | 30114 | 33341 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_22 | 33678 | 34907 | - | GH105 |
| TF | HRGMv2_3877_2 | HRGMv2_3877_2_23 | 34904 | 39295 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_24 | 39445 | 41034 | - | CE12 | CE8 |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_25 | 41140 | 42912 | - | PL1_2 |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_26 | 42944 | 44620 | - | GH28 |
| pfam | HRGMv2_3877_2 | HRGMv2_3877_2_27 | 44735 | 45916 | - | DUF4861 |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_28 | 45918 | 47459 | - | CE19 |
| CAZyme | HRGMv2_3877_2 | HRGMv2_3877_2_29 | 47879 | 49453 | - | GH18 |
| pfam | HRGMv2_3877_2 | HRGMv2_3877_2_30 | 49496 | 50854 | - | BT_3987-like_N | Laminin_G_3 | Laminin_G_3 |
| pfam | HRGMv2_3877_2 | HRGMv2_3877_2_31 | 50862 | 51773 | - | GH18_BT1044-like |
| TC | HRGMv2_3877_2 | HRGMv2_3877_2_32 | 51779 | 53368 | - | 8.A.46.2.2 |
| TC | HRGMv2_3877_2 | HRGMv2_3877_2_33 | 53369 | 56704 | - | 1.B.14.6.13 |
Gene ID: HRGMv2_3877_2_21
Type: TC
Location: 30114 - 33341 (-)
Type: TC
Location: 30114 - 33341 (-)
Gene ID: HRGMv2_3877_2_22
Type: CAZyme
Location: 33678 - 34907 (-)
Type: CAZyme
Location: 33678 - 34907 (-)
Gene ID: HRGMv2_3877_2_23
Type: TF
Location: 34904 - 39295 (-)
Type: TF
Location: 34904 - 39295 (-)
Gene ID: HRGMv2_3877_2_24
Type: CAZyme
Location: 39445 - 41034 (-)
Type: CAZyme
Location: 39445 - 41034 (-)
Gene ID: HRGMv2_3877_2_25
Type: CAZyme
Location: 41140 - 42912 (-)
Type: CAZyme
Location: 41140 - 42912 (-)
Gene ID: HRGMv2_3877_2_26
Type: CAZyme
Location: 42944 - 44620 (-)
Type: CAZyme
Location: 42944 - 44620 (-)
Gene ID: HRGMv2_3877_2_27
Type: pfam
Location: 44735 - 45916 (-)
Type: pfam
Location: 44735 - 45916 (-)
Gene ID: HRGMv2_3877_2_28
Type: CAZyme
Location: 45918 - 47459 (-)
Type: CAZyme
Location: 45918 - 47459 (-)
Gene ID: HRGMv2_3877_2_29
Type: CAZyme
Location: 47879 - 49453 (-)
Type: CAZyme
Location: 47879 - 49453 (-)
Gene ID: HRGMv2_3877_2_30
Type: pfam
Location: 49496 - 50854 (-)
Type: pfam
Location: 49496 - 50854 (-)
Gene ID: HRGMv2_3877_2_31
Type: pfam
Location: 50862 - 51773 (-)
Type: pfam
Location: 50862 - 51773 (-)
Gene ID: HRGMv2_3877_2_32
Type: TC
Location: 51779 - 53368 (-)
Type: TC
Location: 51779 - 53368 (-)
Gene ID: HRGMv2_3877_2_33
Type: TC
Location: 53369 - 56704 (-)
Type: TC
Location: 53369 - 56704 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes cottocaccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.