Genome Details
Selected Rep_genome_ID: HRGMv2_2527
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG449_75 | 1,972,092 | 98.94% | 0.03% | NA | Africa | H3AfricaPhase2 |
| CGMR069997 | 1,762,235 | 97% | 0% | China | Asia | CGMR |
| HRGMv2_2527 | 1,785,769 | 98.94% | 0% | Japan | Asia | HRGM |
| Rep_1026 | 1,840,595 | 98.9448% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2527_CGC18 | CGCFAM_00012 | Yes | 3 | 1 | host glycan/beta-glucan |
| HRGMv2_2527_CGC24 | CGCFAM_00040 | Yes | 4 | 2 | |
| HRGMv2_2527_CGC10 | CGCFAM_00099 | Yes | 7 | 1 | |
| HRGMv2_2527_CGC3 | CGCFAM_00177 | Yes | 3 | 2 | beta-glucan |
| HRGMv2_2527_CGC19 | CGCFAM_00336 | Yes | 9 | 3 | alpha-glucan |
| PUL0230_HRGMv2_2527_C0 | CGCFAM_00336 | Yes | 10 | 3 | alpha-glucan |
| HRGMv2_2527_CGC25 | CGCFAM_01343 | Yes | 5 | 3 | |
| HRGMv2_2527_CGC7 | CGCFAM_01385 | Yes | 13 | 1 | |
| HRGMv2_2527_CGC4 | CGCFAM_01659 | Yes | 7 | 2 | |
| HRGMv2_2527_CGC5 | CGCFAM_01680 | Yes | 12 | 5 | |
| HRGMv2_2527_CGC20 | CGCFAM_02173 | Yes | 12 | 1 | |
| PUL0267_HRGMv2_2527_C2 | CGCFAM_04151 | Yes | 8 | 3 | alpha-glucan |
| HRGMv2_2527_CGC9 | CGCFAM_10106 | Yes | 14 | 1 |
Top CAZyme Families