Cluster: PUL0230_HRGMv2_2527_C0
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2527
- CGC Family ID: CGCFAM_00336
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_1 | 3 | 815 | - | 3.A.1.1.27 |
| TC | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_4 | 2247 | 3473 | - | 3.A.1.1.27 |
| TC | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_5 | 3565 | 4671 | - | 3.A.1.1.20 |
| pfam | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_6 | 4694 | 5359 | - | Hydrolase | HAD_2 |
| CAZyme | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_7 | 5352 | 7616 | - | GH65 |
| CAZyme | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_8 | 7793 | 9514 | - | CBM34 | GH13_20 |
| CAZyme | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_9 | 9518 | 11176 | - | GH13_31 |
| pfam | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_10 | 11303 | 12481 | - | Acetate_kinase |
| TF | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_11 | 12616 | 13566 | - | LacI |
| pfam | PUL0230_HRGMv2_2527_C0 | HRGMv2_2527_33_12 | 13574 | 14347 | - | Y_phosphatase3 |
Gene ID: HRGMv2_2527_33_1
Type: TC
Location: 3 - 815 (-)
Type: TC
Location: 3 - 815 (-)
Gene ID: HRGMv2_2527_33_4
Type: TC
Location: 2247 - 3473 (-)
Type: TC
Location: 2247 - 3473 (-)
Gene ID: HRGMv2_2527_33_5
Type: TC
Location: 3565 - 4671 (-)
Type: TC
Location: 3565 - 4671 (-)
Gene ID: HRGMv2_2527_33_6
Type: pfam
Location: 4694 - 5359 (-)
Type: pfam
Location: 4694 - 5359 (-)
Gene ID: HRGMv2_2527_33_7
Type: CAZyme
Location: 5352 - 7616 (-)
Type: CAZyme
Location: 5352 - 7616 (-)
Gene ID: HRGMv2_2527_33_8
Type: CAZyme
Location: 7793 - 9514 (-)
Type: CAZyme
Location: 7793 - 9514 (-)
Gene ID: HRGMv2_2527_33_9
Type: CAZyme
Location: 9518 - 11176 (-)
Type: CAZyme
Location: 9518 - 11176 (-)
Gene ID: HRGMv2_2527_33_10
Type: pfam
Location: 11303 - 12481 (-)
Type: pfam
Location: 11303 - 12481 (-)
Gene ID: HRGMv2_2527_33_11
Type: TF
Location: 12616 - 13566 (-)
Type: TF
Location: 12616 - 13566 (-)
Gene ID: HRGMv2_2527_33_12
Type: pfam
Location: 13574 - 14347 (-)
Type: pfam
Location: 13574 - 14347 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Gene Composition
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