Cluster: HRGMv2_2527_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2527
- CGC Family ID: CGCFAM_02173
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2527_33 | HRGMv2_2527_33_26 | 28577 | 29635 | - | GH170 |
| pfam | HRGMv2_2527_33 | HRGMv2_2527_33_27 | 30073 | 31086 | + | tRNA-synt_2 | AsnA |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_28 | 31139 | 32530 | - | 2.A.3.8.9 |
| peptidase | HRGMv2_2527_33 | HRGMv2_2527_33_29 | 32547 | 33275 | - | C26.UPW |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_30 | 33394 | 34770 | - | 2.A.3.1.15 |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_31 | 34807 | 36108 | - | 2.A.3.1.16 |
| NULL(UNKNOWN) | HRGMv2_2527_33 | HRGMv2_2527_33_32 | 36251 | 36997 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_2527_33 | HRGMv2_2527_33_33 | 37074 | 37706 | - | S26.UPA |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_34 | 37827 | 39956 | - | 3.A.9.1.2 |
| pfam | HRGMv2_2527_33 | HRGMv2_2527_33_35 | 40271 | 41143 | - | DUF915 |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_36 | 41136 | 42443 | - | 4.A.3.2.7 |
| TC | HRGMv2_2527_33 | HRGMv2_2527_33_37 | 42529 | 43230 | + | 3.A.1.122.7 |
Gene ID: HRGMv2_2527_33_26
Type: CAZyme
Location: 28577 - 29635 (-)
Type: CAZyme
Location: 28577 - 29635 (-)
Gene ID: HRGMv2_2527_33_27
Type: pfam
Location: 30073 - 31086 (+)
Type: pfam
Location: 30073 - 31086 (+)
Gene ID: HRGMv2_2527_33_28
Type: TC
Location: 31139 - 32530 (-)
Type: TC
Location: 31139 - 32530 (-)
Gene ID: HRGMv2_2527_33_29
Type: peptidase
Location: 32547 - 33275 (-)
Type: peptidase
Location: 32547 - 33275 (-)
Gene ID: HRGMv2_2527_33_30
Type: TC
Location: 33394 - 34770 (-)
Type: TC
Location: 33394 - 34770 (-)
Gene ID: HRGMv2_2527_33_31
Type: TC
Location: 34807 - 36108 (-)
Type: TC
Location: 34807 - 36108 (-)
Gene ID: HRGMv2_2527_33_32
Type:
Location: 36251 - 36997 (-)
Type:
Location: 36251 - 36997 (-)
Gene ID: HRGMv2_2527_33_33
Type: peptidase
Location: 37074 - 37706 (-)
Type: peptidase
Location: 37074 - 37706 (-)
Gene ID: HRGMv2_2527_33_34
Type: TC
Location: 37827 - 39956 (-)
Type: TC
Location: 37827 - 39956 (-)
Gene ID: HRGMv2_2527_33_35
Type: pfam
Location: 40271 - 41143 (-)
Type: pfam
Location: 40271 - 41143 (-)
Gene ID: HRGMv2_2527_33_36
Type: TC
Location: 41136 - 42443 (-)
Type: TC
Location: 41136 - 42443 (-)
Gene ID: HRGMv2_2527_33_37
Type: TC
Location: 42529 - 43230 (+)
Type: TC
Location: 42529 - 43230 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.