Cluster: HRGMv2_2527_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2527
- CGC Family ID: CGCFAM_00099
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2527_13 | HRGMv2_2527_13_116 | 112608 | 114233 | + | 2.A.3.7.2 |
| peptidase | HRGMv2_2527_13 | HRGMv2_2527_13_117 | 114291 | 115238 | - | S09.B04 |
| CAZyme | HRGMv2_2527_13 | HRGMv2_2527_13_118 | 115377 | 116852 | - | GH1 |
| NULL(UNKNOWN) | HRGMv2_2527_13 | HRGMv2_2527_13_119 | 116935 | 117081 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2527_13 | HRGMv2_2527_13_120 | 117068 | 117604 | - | 4.A.1.2.6 |
| TC | HRGMv2_2527_13 | HRGMv2_2527_13_121 | 117601 | 117981 | - | 4.A.1.2.6 |
| TC | HRGMv2_2527_13 | HRGMv2_2527_13_122 | 118187 | 118837 | - | 4.A.1.2.6 |
Gene ID: HRGMv2_2527_13_116
Type: TC
Location: 112608 - 114233 (+)
Type: TC
Location: 112608 - 114233 (+)
Gene ID: HRGMv2_2527_13_117
Type: peptidase
Location: 114291 - 115238 (-)
Type: peptidase
Location: 114291 - 115238 (-)
Gene ID: HRGMv2_2527_13_118
Type: CAZyme
Location: 115377 - 116852 (-)
Type: CAZyme
Location: 115377 - 116852 (-)
Gene ID: HRGMv2_2527_13_119
Type:
Location: 116935 - 117081 (-)
Type:
Location: 116935 - 117081 (-)
Gene ID: HRGMv2_2527_13_120
Type: TC
Location: 117068 - 117604 (-)
Type: TC
Location: 117068 - 117604 (-)
Gene ID: HRGMv2_2527_13_121
Type: TC
Location: 117601 - 117981 (-)
Type: TC
Location: 117601 - 117981 (-)
Gene ID: HRGMv2_2527_13_122
Type: TC
Location: 118187 - 118837 (-)
Type: TC
Location: 118187 - 118837 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus amylovorus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.