Genome Details
Selected Rep_genome_ID: HRGMv2_1892
Total Genomes Found: 13
Total Genomes Found: 13
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900556915
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG244_bin.2 | 2,253,368 | 97.44% | 0.24% | NA | Africa | H3AfricaPhase2 |
| CGMR100338 | 1,928,432 | 97.3% | 0.23% | China | Asia | CGMR |
| HRGMv2_1892 | 2,084,073 | 97.7% | 0% | Italy | Europe | HRGM |
| Rep_1250 | 2,590,071 | 98.1132% | 1.51617% | NA | NA | WIS |
| SPMP16_bin.9 | 2,396,988 | 96.23% | 1.65% | Singapore | Asia | SPMP |
| SPMP17_bin.39 | 2,258,883 | 95.48% | 3.4% | Singapore | Asia | SPMP |
| SPMP28_bin.107 | 2,662,452 | 94.81% | 4.75% | Singapore | Asia | SPMP |
| SPMP29_bin.44 | 2,217,585 | 97.17% | 1.52% | Singapore | Asia | SPMP |
| SPMP31_bin.23 | 2,380,829 | 97.17% | 4.35% | Singapore | Asia | SPMP |
| SPMP36_bin.76 | 2,171,750 | 96.23% | 3.4% | Singapore | Asia | SPMP |
| SPMP43_bin.137 | 2,657,462 | 92.22% | 3.4% | Singapore | Asia | SPMP |
| SPMP74_bin.90 | 2,148,114 | 94.34% | 1.38% | Singapore | Asia | SPMP |
| SPMP76_bin.38 | 2,335,500 | 91.51% | 4.42% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1892_CGC15 | CGCFAM_00012 | Yes | 4 | 2 | host glycan/beta-glucan |
| HRGMv2_1892_CGC1 | CGCFAM_00014 | Yes | 6 | 1 | host glycan |
| HRGMv2_1892_CGC7 | CGCFAM_00020 | Yes | 6 | 1 | host glycan/beta-glucan |
| HRGMv2_1892_CGC18 | CGCFAM_00092 | Yes | 5 | 1 | |
| HRGMv2_1892_CGC4 | CGCFAM_00102 | Yes | 9 | 2 | |
| HRGMv2_1892_CGC8 | CGCFAM_03140 | Yes | 3 | 1 | |
| HRGMv2_1892_CGC12 | CGCFAM_09887 | Yes | 7 | 2 | |
| HRGMv2_1892_CGC17 | CGCFAM_09888 | Yes | 4 | 1 |
Top CAZyme Families