Cluster: HRGMv2_1892_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_00092
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_82 | HRGMv2_1892_82_4 | 2893 | 3774 | + | 3.A.1.1.25 |
| TC | HRGMv2_1892_82 | HRGMv2_1892_82_5 | 3786 | 4646 | + | 3.A.1.1.18 |
| pfam | HRGMv2_1892_82 | HRGMv2_1892_82_6 | 4657 | 4830 | + | DUF6903 |
| TC | HRGMv2_1892_82 | HRGMv2_1892_82_7 | 4842 | 5933 | + | 3.A.1.1.26 |
| CAZyme | HRGMv2_1892_82 | HRGMv2_1892_82_8 | 5950 | 8094 | + | GH112 |
Gene ID: HRGMv2_1892_82_4
Type: TC
Location: 2893 - 3774 (+)
Type: TC
Location: 2893 - 3774 (+)
Gene ID: HRGMv2_1892_82_5
Type: TC
Location: 3786 - 4646 (+)
Type: TC
Location: 3786 - 4646 (+)
Gene ID: HRGMv2_1892_82_6
Type: pfam
Location: 4657 - 4830 (+)
Type: pfam
Location: 4657 - 4830 (+)
Gene ID: HRGMv2_1892_82_7
Type: TC
Location: 4842 - 5933 (+)
Type: TC
Location: 4842 - 5933 (+)
Gene ID: HRGMv2_1892_82_8
Type: CAZyme
Location: 5950 - 8094 (+)
Type: CAZyme
Location: 5950 - 8094 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_82_4 | vegan > omnivore | 2.15807 | 0.00224 |
| HRGMv2_1892_82_4 | vegetarian > omnivore | 2.42328 | 0.01332 |
| HRGMv2_1892_82_5 | vegan > omnivore | 2.65183 | 0.00224 |
| HRGMv2_1892_82_5 | vegetarian > omnivore | 1.62913 | 0.01332 |
| HRGMv2_1892_82_6 | vegetarian > omnivore | 2.07254 | 0.01332 |
| HRGMv2_1892_82_6 | vegetarian > vegan | 1.96732 | 0.04140 |