Cluster: HRGMv2_1892_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_1 | HRGMv2_1892_1_32 | 32814 | 33362 | + | 2.A.5.5.2 |
| TC | HRGMv2_1892_1 | HRGMv2_1892_1_33 | 33449 | 34810 | + | 2.A.66.1.33 |
| TF | HRGMv2_1892_1 | HRGMv2_1892_1_34 | 34807 | 35562 | - | HTH_DeoR |
| TC | HRGMv2_1892_1 | HRGMv2_1892_1_35 | 35791 | 36096 | + | 4.A.3.1.2 |
| TC | HRGMv2_1892_1 | HRGMv2_1892_1_36 | 36114 | 37778 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1892_1 | HRGMv2_1892_1_37 | 37781 | 39181 | + | GH1 |
Gene ID: HRGMv2_1892_1_32
Type: TC
Location: 32814 - 33362 (+)
Type: TC
Location: 32814 - 33362 (+)
Gene ID: HRGMv2_1892_1_33
Type: TC
Location: 33449 - 34810 (+)
Type: TC
Location: 33449 - 34810 (+)
Gene ID: HRGMv2_1892_1_34
Type: TF
Location: 34807 - 35562 (-)
Type: TF
Location: 34807 - 35562 (-)
Gene ID: HRGMv2_1892_1_35
Type: TC
Location: 35791 - 36096 (+)
Type: TC
Location: 35791 - 36096 (+)
Gene ID: HRGMv2_1892_1_36
Type: TC
Location: 36114 - 37778 (+)
Type: TC
Location: 36114 - 37778 (+)
Gene ID: HRGMv2_1892_1_37
Type: CAZyme
Location: 37781 - 39181 (+)
Type: CAZyme
Location: 37781 - 39181 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_1_33 | vegetarian > omnivore | 1.75741 | 0.01332 |
| HRGMv2_1892_1_37 | vegan > omnivore | 1.13413 | 0.00224 |