dbCAN HGM

Cluster: HRGMv2_1892_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1892_12	HRGMv2_1892_12_2	720	1904	+	3.A.5.2.1
TC	HRGMv2_1892_12	HRGMv2_1892_12_3	1917	3503	+	3.A.5.10.1
TC	HRGMv2_1892_12	HRGMv2_1892_12_4	3490	5001	+	3.A.5.10.1
pfam	HRGMv2_1892_12	HRGMv2_1892_12_5	4991	5422	+	Sec-ASP3
TC	HRGMv2_1892_12	HRGMv2_1892_12_6	5424	7733	+	3.A.5.10.1
CAZyme	HRGMv2_1892_12	HRGMv2_1892_12_7	7752	9233	+	GT4
NULL(UNKNOWN)	HRGMv2_1892_12	HRGMv2_1892_12_8	9227	10537	+	NULL(UNKNOWN) [View Structural Homologs]
NULL(UNKNOWN)	HRGMv2_1892_12	HRGMv2_1892_12_9	10552	10722	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	HRGMv2_1892_12	HRGMv2_1892_12_10	10759	12297	+	GT2

Gene ID: HRGMv2_1892_12_2
Type: TC
Location: 720 - 1904 (+)

Gene ID: HRGMv2_1892_12_3
Type: TC
Location: 1917 - 3503 (+)

Gene ID: HRGMv2_1892_12_4
Type: TC
Location: 3490 - 5001 (+)

Gene ID: HRGMv2_1892_12_5
Type: pfam
Location: 4991 - 5422 (+)

Gene ID: HRGMv2_1892_12_6
Type: TC
Location: 5424 - 7733 (+)

Gene ID: HRGMv2_1892_12_7
Type: CAZyme
Location: 7752 - 9233 (+)

Gene ID: HRGMv2_1892_12_8
Type:
Location: 9227 - 10537 (+)

Gene ID: HRGMv2_1892_12_9
Type:
Location: 10552 - 10722 (+)

Gene ID: HRGMv2_1892_12_10
Type: CAZyme
Location: 10759 - 12297 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1892_12_2	vegan > omnivore	18.42952	0.00224
HRGMv2_1892_12_2	vegetarian > omnivore	18.53611	0.01332
HRGMv2_1892_12_5	vegan > omnivore	1.33482	0.00224
HRGMv2_1892_12_5	vegetarian > omnivore	3.60153	0.01332
HRGMv2_1892_12_5	vegetarian > vegan	2.26671	0.04140
HRGMv2_1892_12_6	vegan > omnivore	2.59502	0.00224
HRGMv2_1892_12_6	vegetarian > omnivore	3.18960	0.01332
HRGMv2_1892_12_7	vegan > omnivore	1.38797	0.00224
HRGMv2_1892_12_7	vegetarian > omnivore	2.04779	0.01332