Cluster: HRGMv2_1892_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_00020
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_22 | HRGMv2_1892_22_12 | 14465 | 15844 | - | 2.A.66.1.32 |
| TF | HRGMv2_1892_22 | HRGMv2_1892_22_13 | 15846 | 16277 | - | MarR |
| pfam | HRGMv2_1892_22 | HRGMv2_1892_22_14 | 16536 | 17378 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1892_22 | HRGMv2_1892_22_15 | 17566 | 19422 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_1892_22 | HRGMv2_1892_22_16 | 19446 | 20855 | + | GH1 |
| TC | HRGMv2_1892_22 | HRGMv2_1892_22_17 | 20970 | 23306 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1892_22_12
Type: TC
Location: 14465 - 15844 (-)
Type: TC
Location: 14465 - 15844 (-)
Gene ID: HRGMv2_1892_22_13
Type: TF
Location: 15846 - 16277 (-)
Type: TF
Location: 15846 - 16277 (-)
Gene ID: HRGMv2_1892_22_14
Type: pfam
Location: 16536 - 17378 (+)
Type: pfam
Location: 16536 - 17378 (+)
Gene ID: HRGMv2_1892_22_15
Type: TC
Location: 17566 - 19422 (+)
Type: TC
Location: 17566 - 19422 (+)
Gene ID: HRGMv2_1892_22_16
Type: CAZyme
Location: 19446 - 20855 (+)
Type: CAZyme
Location: 19446 - 20855 (+)
Gene ID: HRGMv2_1892_22_17
Type: TC
Location: 20970 - 23306 (+)
Type: TC
Location: 20970 - 23306 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.